Pairwise Alignments

Query, 650 a.a., DNA helicase, Rad3 from Dechlorosoma suillum PS

Subject, 690 a.a., ATP-dependent DNA helicase DinG (RefSeq) from Shewanella loihica PV-4

 Score =  212 bits (540), Expect = 4e-59
 Identities = 191/682 (28%), Positives = 314/682 (46%), Gaps = 80/682 (11%)

Query: 21  LSANIPGYRTRSQQVEMAEKIAAAIADN-----RMLVAEAGTGTGKTYAYLVP----ALL 71
           ++A +P +R+R +Q  +  +I+  +A       R++V EAGTG GK+ AY++     AL 
Sbjct: 17  IAAALPNFRSRREQNYIVAEISKTLAGEYDKHRRIIVVEAGTGIGKSLAYILGSIPLALA 76

Query: 72  SGGKVIVSTGTKTLQDQLFNKDIPTVRAALKAPVKVALLKGRANYVCPYHLDRSLLDG-- 129
           S  KV ++T T  LQ+QL NKD+P             L+KGR  YVC   L+  L+ G  
Sbjct: 77  SKKKVCIATATVALQEQLLNKDLPFFSKQSGLNFTFGLVKGRQRYVCLSKLEM-LIGGDD 135

Query: 130 -----RFQNRED---VAYIQKIARFAKETRSGDKAECLDVPENATAWIMATSTRENCLGQ 181
                 +Q + D   V  +Q + +   E R   + + L        W      + +C  +
Sbjct: 136 GTQMAMWQTKPDHNQVELLQGLLKDFHEGRWNGERDTLSQQLPDHLWQQIACDKHSC-HR 194

Query: 182 ECPHHKECFVLQARKEALSADVVVVNHHLFFADVMLKDEGMAELLPACNAV--IFDEAHQ 239
           +   H+ C   +AR++  + DV++ NH L FAD+ L   G   +LP    +  + DEAH 
Sbjct: 195 QLASHRHCPFHKAREDVDTWDVLIANHSLLFADLEL---GGGVILPDPEELYYVIDEAHH 251

Query: 240 LPETASLFFGDSFSTSQVLD-----------LARDARSEGL-ASARDCLD-LQEATRIVD 286
           LP  A  F     +    +D           L    +S  + A A+  LD + + T ++ 
Sbjct: 252 LPIVARDFSSAQATLRGAIDWLEKVGKTSAKLQNQLKSYNIIAPAQAMLDHINDLTSLLT 311

Query: 287 KAAK--DLRLTVAVEPAR---YAWGQLEGNAQFL---------DGLANLEKELELLNAIL 332
             A+  D +      P R   +  G+L      L           L    K L LLN  +
Sbjct: 312 SVAQYCDGQAAKFDNPERRIRFEHGKLPAALTMLAENLATASSSALKQFNKMLVLLNEAI 371

Query: 333 ENQAERSEGLENCWRRNGELLQRLIQ----WRQ-------EQPGVVRWGEAF---NHSLQ 378
           ++        E      G +LQRL      W+        +   + RW E          
Sbjct: 372 KDGELPKHQSEQLLSETGFMLQRLENLQKLWKMMAKEDSAKGAPMARWVEHLVGKQSDYL 431

Query: 379 LNATPLDVARLFRKQLDGHPRAWIFTSATLAVQADFSHYCNELGLWDAESARW---ESPF 435
            N +P++V  +    L       +  SATL    +F+H+ +++GL   + +R+   +SPF
Sbjct: 432 FNVSPIEVGYMLETLLWEKAAGVVLCSATLRALNNFNHFTHQVGLSINDGSRYLAMDSPF 491

Query: 436 DYGQQAVLYAPRDIPDPNLPGFTEAVVEAAWPALKACGGGAFFLCTSLRAMRRTHELLAA 495
           D+ Q A LY P+   +P    +T+ + E     +         L  S   M +  +L+ +
Sbjct: 492 DFQQNATLYLPKMRTEPTDDRYTDELAEQILTLIDG-EMATLVLFASYWQMEKVADLVRS 550

Query: 496 KLEDEGLEMPLLLQGEGSKTELLERFR-RLGN---AVLVGSQSFWEGVDVRGEALSLVVI 551
           K++      PLL+QGE S+ +LL+  + R  N   +++ G+ SF EG+D+ G+ L+ ++I
Sbjct: 551 KIKS-----PLLIQGEASRQQLLQDHKQRCDNGEVSIIFGTGSFSEGLDLPGDYLTNLII 605

Query: 552 DKLPFAPPDDPVLKARVEQMEKEGRSAFMEYQLPRAVINVKQGAGRLIRDETDRGVLMIC 611
            KLPFA P  PV +A  E ++ +G + F++  +P A   + Q  GRL+R E D G + I 
Sbjct: 606 TKLPFAVPTSPVEQAHAEYIKAKGGNPFLQLTIPDASRKLIQSCGRLLRKEEDYGRITIL 665

Query: 612 DPRLITKPYGKRVWRSLPPMKR 633
           D RL+TK YGK +  +LPP ++
Sbjct: 666 DRRLVTKRYGKSLLDALPPFRQ 687