Pairwise Alignments

Query, 650 a.a., DNA helicase, Rad3 from Dechlorosoma suillum PS

Subject, 669 a.a., ATP-dependent DNA helicase from Methanococcus maripaludis S2

 Score = 89.0 bits (219), Expect = 6e-22
 Identities = 153/659 (23%), Positives = 271/659 (41%), Gaps = 124/659 (18%)

Query: 26  PGYRTRSQQVEMAEKIAAAIADNRMLVAEAGTGTGKTYAYLVPALL---SGGKVIVSTGT 82
           P +  R QQ  +  KI   +   + LV EA TG GKT +YL+PAL     G +V++ T T
Sbjct: 15  PYHGMRPQQEVLMGKIYECVTKKKNLVVEAPTGVGKTLSYLIPALYFAERGKRVMILTET 74

Query: 83  KTLQDQLFNKDIPTVRAALKAPVKVALLKGRANYVCPYHLDRSLLDGRFQNREDVAYIQK 142
              Q+++  +D+ +    LK  +KV+ + G+ N+ C    +++          +  Y Q 
Sbjct: 75  IDQQERIV-EDLNS----LKHNLKVSFMMGKGNFFCKAKGEKA----------NTLYCQL 119

Query: 143 ----IARFAKETRS--GDKAECLDVPENATAWIMATSTRENCLGQECPHHKECFVLQARK 196
               I R  K+     G K E ++   N T +         CL         C   +A+ 
Sbjct: 120 NKGCIYRPNKKPVCVCGTKKEKIEFDGNTTFYCPL------CL---------CDYQKAKI 164

Query: 197 EALSADVVVVNHHLFFADVMLKDEGMAELLPACNAVIFDEAHQLP----ETASLFFGDSF 252
           E+  A+++V+N+ +++    LKDE   +     + VI DEAH+L       A++     +
Sbjct: 165 ESFDANIIVMNNSIYY---YLKDE--IDKKKQTDIVICDEAHKLEGSIRNAATIVINPKY 219

Query: 253 STSQVLDLARDARSEGLASARDCLDLQEATRIVDKAAKDLRLTVAVEPARYAWGQLEGNA 312
           +  ++  +A    +  L    D        R+ ++  +     V     + A G+   N+
Sbjct: 220 ALRRLRFMAYHYSNSRLRVHMD--------RVTEEDDEIFWTIVEDYVVKNASGKDCKNS 271

Query: 313 QFLDGLA----NLEKELELLNAILENQAER---SEGLENCWRRNGELLQRLIQWRQEQPG 365
              DG       L++++ +L  +LE   E     E +E+    N EL ++ ++++ +   
Sbjct: 272 LVFDGFKITSFGLKEDVAILGTLLEGYNEIVKIKEKIEDL-SENEELDKKDLKFKIDNKA 330

Query: 366 VVRWGEAFNHSLQLNATPL-----DVARLFRKQLDGHPRAWIFTSATLAVQADFSHYCNE 420
           ++     F    +++  P+     ++  L  + + G+   +    + L      S Y N 
Sbjct: 331 LIPLELQFVADRRISDVPMVEFLENLGNL--RNITGNFVVYKNNGSILCEPVLVSTYLNR 388

Query: 421 L-----------------------GLWDAESARWESPFDYGQQAVLYAPRDIPDPNLPGF 457
           L                       G+  +E+   +SPF   ++ ++ A  D  D      
Sbjct: 389 LYGDASVVHCSATLGDLKIHAIKTGMGRSETLLLDSPFSKDRRNII-ALSDGEDMKFNSI 447

Query: 458 T--------EAVVEAAWPALKACGGGAFFLCTSLRAMRRTHELLAAKLEDEGLEMPLL-- 507
                        E  +  + A  G    L  S   ++  HE       D G    +   
Sbjct: 448 DFQSNNKKRNKANENLFKMVNAAKGNTLILFKSFGDLKTAHEYFL----DAGYRGNIYCY 503

Query: 508 ---LQGEGSKTELLERFRRLGNAVLVGSQSFWEGVDVRGEALSLVVIDKLPFAPPDDPVL 564
              + G+ +K +L E F++ G  +L+ +  F EGVD+ G+AL+ V+ID LPF P   P+L
Sbjct: 504 ESGMDGKAAK-KLKEDFQKYGG-LLLATGRFAEGVDIPGDALTCVIIDSLPF-PVPTPLL 560

Query: 565 KARVEQMEKEGR---------SAFMEYQLPRAVINVKQGAGRLIRDETDRGVLMICDPR 614
           K     +E+  +         SAF+          V Q  GRLIR ETD GV++I D R
Sbjct: 561 KREQTLLEERLKSRKVKDAHWSAFLMTSFHIMARTVIQMIGRLIRTETDYGVVVIQDKR 619