Pairwise Alignments

Query, 650 a.a., DNA helicase, Rad3 from Dechlorosoma suillum PS

Subject, 740 a.a., helicase from Herbaspirillum seropedicae SmR1

 Score =  751 bits (1938), Expect = 0.0
 Identities = 379/672 (56%), Positives = 480/672 (71%), Gaps = 36/672 (5%)

Query: 9   ADTAAVFEPGGPLSANIPGYRTRSQQVEMAEKIAAAIADNRMLVAEAGTGTGKTYAYLVP 68
           A+   +F  GGPL   +  YR R  Q EMA+ IA AIA    L+AEAGTGTGKT+AYLVP
Sbjct: 49  AEIDRLFGAGGPLGGAVGSYRPRHAQTEMAKAIATAIAGQGTLIAEAGTGTGKTFAYLVP 108

Query: 69  ALLSGGKVIVSTGTKTLQDQLFNKDIPTVRAALKAPVKVALLKGRANYVCPYHLDRSLLD 128
           ALL GGK IVSTGTKTLQDQLFN+DIPTVR AL APV VALLKGR+NYVC +HL+R+L +
Sbjct: 109 ALLWGGKTIVSTGTKTLQDQLFNRDIPTVRKALHAPVSVALLKGRSNYVCHFHLERTLQN 168

Query: 129 GRFQNREDVAYIQKIARFAKETRSGDKAECLDVPENATAWIMATSTRENCLGQECPHHKE 188
           GR   REDV Y+++I+RF K T SGDKAE   VPE A+ W + TSTR+ C G EC ++++
Sbjct: 169 GRLTAREDVGYLREISRFVKSTSSGDKAELTKVPETASVWNLVTSTRDTCFGAECQYYQD 228

Query: 189 CFVLQARKEALSADVVVVNHHLFFADVMLKDEGMAELLPACNAVIFDEAHQLPETASLFF 248
           CFV++ARKEA  ADVVVVNHHLFFADV LKD G+AELLP+ N VIFDEAHQLP+TA+LFF
Sbjct: 229 CFVMKARKEAQQADVVVVNHHLFFADVALKDTGIAELLPSANTVIFDEAHQLPDTATLFF 288

Query: 249 GDSFSTSQVLDLARDARSEGLASARDCLDLQEATRIVDKAAKDLRLTVAVEPARYAWGQL 308
           G++ STSQ+L+L RD  +EGL+ ARD  D       V++AA+DLRL  + +  R A  Q+
Sbjct: 289 GETISTSQILELCRDVLAEGLSHARDGADWARLVAPVERAARDLRLAFSEDSVRLALNQI 348

Query: 309 EGNAQFLDGLANLEKELELLNAILENQAERSEGLENCWRRNGELLQRLIQW--------- 359
             ++ F   L  L+  ++ +  +LE QAER+E +E C  R  ELL++L  W         
Sbjct: 349 APSSTFFPALDTLKDCMDDMITVLEKQAERAETIEQCRDRANELLRQLENWGTPEELEKI 408

Query: 360 -----------------------RQE----QPGVVRWGEAFNHSLQLNATPLDVARLFRK 392
                                  +QE    +P  V W EAF  SLQL+ TPL +A +F K
Sbjct: 409 QAEAAAKAAAKPAEAKRAESGDEQQEPSGQKPFYVLWVEAFQSSLQLHRTPLSIAPIFNK 468

Query: 393 QLDGHPRAWIFTSATLAVQADFSHYCNELGLWDAESARWESPFDYGQQAVLYAPRDIPDP 452
           Q +G PR+WIFTSATLAV+ DF+HY  ++GLW+A +  W SPF+YG+Q +LY P+++P P
Sbjct: 469 QREGTPRSWIFTSATLAVKKDFNHYAAQMGLWNAPAQSWPSPFNYGEQGILYVPQNLPQP 528

Query: 453 NLPGFTEAVVEAAWPALKACGGGAFFLCTSLRAMRRTHELLAAKLEDEGLEMPLLLQGEG 512
           N   +T+AV++AA P ++A GG  FFLCT+LRA+ R  E L A+ E  G   PL +QGE 
Sbjct: 529 NSFEYTDAVIDAALPIIEAAGGRCFFLCTTLRAVNRAAERLRAEFEARGHAFPLFVQGEA 588

Query: 513 SKTELLERFRRLGNAVLVGSQSFWEGVDVRGEALSLVVIDKLPFAPPDDPVLKARVEQME 572
            +TELL+RFR  GN VL+GSQSFWEGVDVRG+ALSLV+IDKLPF+PPDDPVL AR+ +ME
Sbjct: 589 GRTELLDRFRAAGNGVLIGSQSFWEGVDVRGDALSLVIIDKLPFSPPDDPVLAARISEME 648

Query: 573 KEGRSAFMEYQLPRAVINVKQGAGRLIRDETDRGVLMICDPRLITKPYGKRVWRSLPPMK 632
           K+G + F+ +QLP A+IN+KQGAGRLIRDE DRGVLMICDPR+ITK YG+R+W+SLPP K
Sbjct: 649 KQGLNGFVHHQLPAAIINLKQGAGRLIRDEGDRGVLMICDPRIITKNYGRRIWQSLPPFK 708

Query: 633 RTRDLIEVLDFY 644
           RTR+   V  F+
Sbjct: 709 RTREQEVVQAFF 720