Pairwise Alignments

Query, 387 a.a., nucleotidyltransferase/DNA polymerase involved in DNA repair from Dechlorosoma suillum PS

Subject, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

 Score =  160 bits (406), Expect = 4e-44
 Identities = 107/323 (33%), Positives = 168/323 (52%), Gaps = 30/323 (9%)

Query: 9   RRIAHLDMDAFFASVELLHYPELRGRPVVVGGRAVDRPRRQADGSLHFARLRDYVGRGVI 68
           R+I H+DMD FFA+VE+   P  R   + VGG    R                    GVI
Sbjct: 6   RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQR--------------------GVI 45

Query: 69  TTSTYEARALGVFSGMGLMKAAQLAPDAILLPANFDAYRDYSRRFKAAVAAIAPCIEDRG 128
           +T  Y+AR  GV S M   +A +L P   ++P     Y+  S++ +         IE   
Sbjct: 46  STCNYQARKFGVRSAMPTAQALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLS 105

Query: 129 IDEIYIDLSHIE----EATLPLARRLKAAVLAATGLTCSIGITPNKLLSKICSDLDKPDG 184
           +DE Y+D+S        ATL +A+ ++  +     LT S G+ P K L+K+ SDL+KPDG
Sbjct: 106 LDEAYLDVSESTAYQGSATL-IAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDG 164

Query: 185 ITVLGMEEVPTRIWPLVAKKINGIGPKANERLGQLGIHSIGDLAAAPPEMLVQHFGRSTG 244
           + V+  ++V   +  L  +KI G+G  A E+L Q G++   D+  A    L+  FGR  G
Sbjct: 165 LYVVTPDKVQEMVDSLPLEKIPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGR-LG 223

Query: 245 AWLHRAAHGIDERPLSTSREPKSISRESTFSRDLHARHDRAELSE--IFTGMCLRVADDL 302
           A L + +HGIDER + T RE KS+  E TFS+++    +  ++ E  ++  +  R++   
Sbjct: 224 ASLWKKSHGIDEREVVTERERKSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAH 283

Query: 303 ARQGYVARTIGIKLRYADFQSVT 325
            ++G + +  GIK+++ADFQ  T
Sbjct: 284 PQRGIIKQ--GIKVKFADFQQTT 304