Pairwise Alignments

Query, 431 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Dechlorosoma suillum PS

Subject, 444 a.a., 23S rRNA 5-methyluridine methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score =  301 bits (770), Expect = 3e-86
 Identities = 171/426 (40%), Positives = 248/426 (58%), Gaps = 9/426 (2%)

Query: 6   IESLDHDARGVTRLEGKTVFVEGALPGETVEYALFREKPNYAVGEVSAVLRPSCARVPPR 65
           +  LDH   G+   +GK VF+ GALP ETV   +  +K  +A  ++  V   S AR+   
Sbjct: 23  VSQLDHLGAGIAEHQGKIVFIPGALPDETVTAQIVEQKKRHAKAKLIKVESASAARIEAS 82

Query: 66  CPHFGTCGGCSMQHLEPTAQVAAKQRLLENNLWHLARLKPEQVYNPIYGPTWGYRHRARL 125
           CP++G CGGC +QHLE +AQ  AKQ  LEN +  + R +P+ +  P+ G  W YR RARL
Sbjct: 83  CPYYGRCGGCDLQHLELSAQRDAKQTALENLINKMGRTQPQTMSEPLSGEGWHYRRRARL 142

Query: 126 TVRMV-ESKGMLVGFHEKRSSYVADLHTCPILPAHVSDLLVPLRQLFVRLSIRDRLPQVE 184
             + + ++K + +GF    SS V ++  CP+L   +S+L+ PL Q   RLS +  L  VE
Sbjct: 143 ATQYLRDTKQLNLGFRALASSEVVNIDACPVLAKSLSELIAPLNQCLNRLSAKRSLGHVE 202

Query: 185 IAVGEKCTVMVLRILEPLSGADEKLLRAFADEHGIVFFLQPKGPASAYRFHPVDGPD-LS 243
           +   +    +VLRI  PL+  D+ LL  F ++H +   L         +   + G + L 
Sbjct: 203 LLSVDSGPCVVLRITSPLNDKDKALLATFGEQHKVRLVLLDDDS----KLETLWGDEGLP 258

Query: 244 YLLPEFGLEMRFSPTEFTQVNPGINQMLIRRAMRLLDPQPGERIADLFCGLGNFTLPIAR 303
           Y   E G  + FSP  F QVN  INQ ++ +A+  L  QPGER+ DLFCG+GNFTLP+A+
Sbjct: 259 YYTLEDGSSLGFSPGNFIQVNGEINQQMVTQAIDWLQIQPGERVLDLFCGVGNFTLPLAK 318

Query: 304 SGARVVGVEGLKELTRRAEENAAANGLAANVSFGVANLFECTPKSLGALGHFDKMLIDPP 363
           +GA+VVGVEG+  +  +A  NA  +G+     F   +L      +   LG  DK+L+DP 
Sbjct: 319 AGAQVVGVEGVDAMVAQARVNATMSGV-EGAEFYHGDL-SADLSAAPWLGRIDKLLLDPA 376

Query: 364 REGAVEVVKALGEDSPGRIVYVSCNPSTLARDAAILVHQKGYRFSGAGIVNMFPHTSHVE 423
           R GA E ++ L +  P  IVY+SCNP +LARD   L+ Q GY+ S  G+++MFP T H+E
Sbjct: 377 RAGAYESLQWLKKMKPKAIVYISCNPVSLARDCEPLLAQ-GYQLSRLGLIDMFPQTHHIE 435

Query: 424 SIALFE 429
           ++ALFE
Sbjct: 436 AMALFE 441