Pairwise Alignments

Query, 431 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Dechlorosoma suillum PS

Subject, 454 a.a., RNA methyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  129 bits (324), Expect = 2e-34
 Identities = 122/454 (26%), Positives = 199/454 (43%), Gaps = 41/454 (9%)

Query: 12  DARGVTRLEGKTVFVEGALPGETVEYALFREKPNYAVGEVSAVLRPSCARVPPRCPHFGT 71
           + + + ++    +FV   +PG+ V+  + R+K  YA  E       S  R  P C H+G 
Sbjct: 4   EGKAIAKVNDLVIFVPYVVPGDVVDLQIKRKKNKYAEAEAVKFHELSPVRAVPFCQHYGV 63

Query: 72  CGGCSMQHLEPTAQVAAKQRLLENNLWHLARLKPEQVYNPIYGP--TWGYRHRARLT--- 126
           CGGC  Q L  + Q+  KQ+ +E+NL  + +++  ++ +PI G   T  YR++   T   
Sbjct: 64  CGGCKWQVLPYSEQIRYKQKQVEDNLRRIGKIELPEI-SPILGSAKTEFYRNKLEFTFSN 122

Query: 127 --------VRMVESKGML--VGFHEKRS-SYVADLHTCPI-------LPAHVSDLLVPLR 168
                   VR       +  VGFH   +   V  +  C +       +   V D      
Sbjct: 123 KRWLTNDEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHD 182

Query: 169 QLFVRLSIRDRLPQVEI----AVGEKCTVMVLRILEPLS-GADEKLLRAFADEH----GI 219
             F+ L  ++ + +  I    + GE   +++ +I E       ++LL+  AD       +
Sbjct: 183 YSFINLRTQEGMLRNLIIRTSSTGELMVIVICKITEDHEMELFKQLLQFIADSFPEITSL 242

Query: 220 VFFLQPK--GPASAYRFHPVDGPDLSYLLPEFGLEMRFSPTEFTQVNPGINQMLIRRAMR 277
           ++ +  K     +    H   G D  +   E GL  +  P  F Q N      L + A  
Sbjct: 243 LYIINNKCNDTINDLDVHVFKGKDHMFEEME-GLRFKVGPKSFYQTNSEQAYNLYKIARE 301

Query: 278 LLDPQPGERIADLFCGLGNFTLPIARSGARVVGVEGLKELTRRAEENAAANGLAANVSFG 337
                  E + DL+ G G     ++R   +V+G+E + E    A+ NA  N +  N  F 
Sbjct: 302 FAGLTGKELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINEIK-NALFY 360

Query: 338 VANLFEC-TPKSLGALGHFDKMLIDPPREGA-VEVVKALGEDSPGRIVYVSCNPSTLARD 395
             ++ +  T + +   G  D ++ DPPR G   +VV  +    P RIVYVSCNP+T ARD
Sbjct: 361 AGDMKDMLTQEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARD 420

Query: 396 AAILVHQKGYRFSGAGIVNMFPHTSHVESIALFE 429
             +L     Y+      V+MFPHT HVE++ L E
Sbjct: 421 LQLL--DGKYKVKAVQPVDMFPHTHHVENVVLLE 452