Pairwise Alignments

Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

 Score =  310 bits (793), Expect = 4e-88
 Identities = 204/524 (38%), Positives = 293/524 (55%), Gaps = 40/524 (7%)

Query: 402 AKEAAENANRAKSDFLANMSHEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMSANAL 461
           AK+ A+ A R KS+FLANMSHE+RTP+NGVIG T   L T+LT  Q DYL+ ++ SAN L
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNL 339

Query: 462 LSIIDDILDFSKIEAGRLDVELIPFDLEKVCADALRTVAVRADQKGLELLARRGPGVPRR 521
           L+II+DILDFSK+EAG+L +E IPF+ ++V  + +   A  A +KGLE+  +  P +PR 
Sbjct: 340 LTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRG 399

Query: 522 LLGDPGRLRQILLNLLGNAIKFTERGEIEVAVELAEPGAAGQVLYFCVSDTGIGIAPEKQ 581
           ++GDP R++Q+L NL+GN+IKFTERG I+V+VE+         L F V DTGIGI+  +Q
Sbjct: 400 VVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQ 459

Query: 582 EHIFEAFAQEDSSTTRRFGGTGLGLTICSRLCELMGGRIWVDSVPGQGSAFHFTLQLPT- 640
             +F+AF+Q D+S +RR+GGTGLGL I  +L   MGG I + S   QGS F FTL+L T 
Sbjct: 460 AQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTT 519

Query: 641 -----DGAAAPEPERRLSGKPALLLVVANARQRCRLQGLLASWGATVVAAASGAEGLALL 695
                DG  A     R      LLL+  N +    +Q  L   G  V   ++  E     
Sbjct: 520 ELPLNDGYNADSLNHR-----HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE----- 569

Query: 696 EQGQWDGVVADSRPVDGDAGDLLEHLARSP---------GRVPLLMLLSPSRMRQEIARC 746
           EQ  +D V+ +  P       L+E   +           G     + L+   M++   +C
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKC 629

Query: 747 KALGVGHYLGKPALADELWRSLQALLEPAVAGVPATVAEAAGTPPAGLEVLLAEDHPVNQ 806
                   + KP    +L ++L A  +P +A       +A   P   L V+  +D+P N 
Sbjct: 630 --------ISKPLSRKKLLQTL-AAQQPQLANTSLPKPQADKLP---LCVMAVDDNPANL 677

Query: 807 QLMRNMLERMGHRVTLARHGGEAVAAAARRRFDLVLMDMQMPEMGGEQATRLIRADEQAR 866
           +L+  +L+     V     G EA+  A  R+FD++LMD+QMP M G  A + I+   Q +
Sbjct: 678 KLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIK---QLK 734

Query: 867 GLAPLRIYALSAAARREDRQRGLVAGMDGYLLKPLQQKDLQEVL 910
           G     + A++A A   +R R L AGMD YL KP+++  LQ+VL
Sbjct: 735 GYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVL 778