Pairwise Alignments

Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1236 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  327 bits (837), Expect = 4e-93
 Identities = 254/764 (33%), Positives = 389/764 (50%), Gaps = 36/764 (4%)

Query: 169  DVEGFIIEANDRFCEISGYSREELVGRNHRVVKSGIHPPAFYQEMWDTIVHGRV--WQGE 226
            D EG  +  N     + G+S  E++G +   + S         E    +   +   +Q +
Sbjct: 475  DKEGHYLGCNKAAERMLGFSEAEMIGLSSEELTSPEQGSRIRAEDEQVLTERKPLRYQEK 534

Query: 227  VCNRSKDGRLYWVSATVVPFFDDLGVPYQYIAIRTDITARKLAEARLDEQLHFSRQ---- 282
            +      G+   +    +PF++  G     IA+  D+T     E    EQL  S +    
Sbjct: 535  I---ELAGKPVLLDTLKLPFYNRRGELMGLIAVWRDVTR----EYESAEQLRLSEERYHL 587

Query: 283  VLDTLPVPLYFKDTQGRYQGFNKAFADFFGIEPSLW--IGRHVRDLLPPELAEQHVARDE 340
             +D +   L+           N A+    G + + +  +   +  L+ P+     V    
Sbjct: 588  AMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKTNEFPALLSTIDSLIHPD-DRIRVQEYR 646

Query: 341  EVFARGGRQSYEIELITPAGA-RYDTLYNKAALTR--PDGSVRGLVGTIMDISERKRWEA 397
            E + +    +YEIE    A   +Y  + ++  +     D   + +VGT  DI+  K  E 
Sbjct: 647  EQYLKDPIGAYEIEFRMRAKTGQYHWMLSRGRVVEFTQDAQPKRMVGTHKDITRHKSNEV 706

Query: 398  EILRAKEAAENANRAKSDFLANMSHEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMS 457
             +L AK+ AE AN  KS+FLANMSHEIRTPMN +IGM +LA  T LTE+Q+DYL+    S
Sbjct: 707  ALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAGRTSLTEQQKDYLDKASFS 766

Query: 458  ANALLSIIDDILDFSKIEAGRLDVELIPFDLEKVCADALRTVAVRADQKGLELLARRGPG 517
            A +LL II+DILDFSKIEAG+L++E + F L+KV   +L   A+RA +KG+ELL      
Sbjct: 767  AQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNALRAQEKGIELLLYAPVS 826

Query: 518  VPRRLLGDPGRLRQILLNLLGNAIKFTERGEIEVAVELAEPGAAGQVLYFCVSDTGIGIA 577
                L GDP RL Q+L+NLL NA+KFT+ GEIE+  E          L F V DTGIGI+
Sbjct: 827  AGIMLKGDPLRLGQVLINLLSNAVKFTQNGEIELGCEDVGERDHRITLKFWVRDTGIGIS 886

Query: 578  PEKQEHIFEAFAQEDSSTTRRFGGTGLGLTICSRLCELMGGRIWVDSVPGQGSAFHFTL- 636
             E+Q+ +F+AFAQ D STTR++GGTGLGL+I   L  +MGG + V+S PG GS F FT+ 
Sbjct: 887  REQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEPGVGSTFSFTVS 946

Query: 637  -QLPTDGAAAP--EPERRLSGKPALLLVVANARQRCRLQGLLASWGATVVAAASGAEGLA 693
             ++  +    P   PER  S +   L+V  N         ++  +   V  A++GAE L 
Sbjct: 947  FEIAEEAKVVPMVVPERLASLR--TLVVDDNPTALQIYSSVMRDFHFEVETASTGAEALY 1004

Query: 694  LLEQGQWDGVVADSRPVDGDAGDLLEHLAR--SPGRV---PLLMLLSPSRMRQEIARCKA 748
             L + Q D V+ D    + D   +++ +    + G++   P++++++            +
Sbjct: 1005 KLCKQQVDLVLLDWMMPEMDGIQVIDAIDEMVAEGKLAARPVIIIMTAYAAEPLKVDLDS 1064

Query: 749  LGVGHYLGKPALADELW-RSLQALLEPAVAGVPATVAEAAGTPPAGLEVLLAEDHPVNQQ 807
              V   L KP  A  L+   ++A   PA   +PA   E  G       VLL ED+ +NQQ
Sbjct: 1065 DRVFAMLQKPFKASSLFDEIIRAFAPPAPKALPAPPVEDEGEHQG--VVLLVEDNFINQQ 1122

Query: 808  LMRNMLERMGHRVTLARHGGEAVAAAARRRFDLVLMDMQMPEMGGEQATRLIRADEQARG 867
            +   +L+  G+ V +A +G  ++    +R +D +LMD+QMP M G  A   +R   +   
Sbjct: 1123 VATELLKSAGYEVDVADNGQISLEMVGKRSYDAILMDIQMPVMDGLTAATELR---KRYS 1179

Query: 868  LAPLRIYALSAAARREDRQRGLVAGMDGYLLKPLQQKDLQEVLA 911
               L I A++A A   DR++ L AGM+ ++ KP+   +L E L+
Sbjct: 1180 FDELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLS 1223



 Score = 52.0 bits (123), Expect = 3e-10
 Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 272 RLDEQLHFSRQVLDTLPVPLYFKDTQGRYQGFNKAFADFFGIEPSLWIGRHVRDLLPPEL 331
           R + +    R +LD++P  + FKD +G Y G NKA     G   +  IG    +L  PE 
Sbjct: 452 RREREYALLRSLLDSIPEAIVFKDKEGHYLGCNKAAERMLGFSEAEMIGLSSEELTSPEQ 511

Query: 332 AEQHVARDEEVFARGGRQSYEIELITPAG--ARYDTLYNKAALTRPDGSVRGLVGTIMDI 389
             +  A DE+V        Y+ E I  AG     DTL  K       G + GL+    D+
Sbjct: 512 GSRIRAEDEQVLTERKPLRYQ-EKIELAGKPVLLDTL--KLPFYNRRGELMGLIAVWRDV 568

Query: 390 SERKRWEAEILRAKE 404
           + R+   AE LR  E
Sbjct: 569 T-REYESAEQLRLSE 582