Pairwise Alignments
Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS
Subject, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B
Score = 398 bits (1023), Expect = e-114
Identities = 290/847 (34%), Positives = 443/847 (52%), Gaps = 59/847 (6%)
Query: 219 HGRVWQGEVCNRSKDGRLYWVSATVVPFFDDLGVPYQYIAIRTDITARKLAEARLDEQLH 278
HG W G L W+ A + + + DI+ RK E L +
Sbjct: 844 HGMQWTKAFRYHFPSGELRWLEAGARGSKQQDALVWNGYLM--DISGRKRMETELAQSEA 901
Query: 279 FSRQVLDTLPVPLYFKDTQGRYQGFNKAFADFFGIEPSLWIGRHVRDLLPPE---LAE-- 333
R + D + + D +G + N F GI + + DL+ PE LA
Sbjct: 902 HFRALFDNAGIGIVNLDDRGIIKDCNGQFVSDLGISSDSLKRKQLADLMHPEDRALATGL 961
Query: 334 -QHVARDEEVFARGGRQSYEIELITPAGARYDTLYNKAALTRPDGSVRGLVGTIMDISER 392
Q +A E+ G S E ++ G + L DG R +V +I +I+
Sbjct: 962 YQALAESEQ-----GSISGEWRMLDGDGELMWMAVIASVLEEGDGGERSVVMSIANITRL 1016
Query: 393 KRWEAEILRAKEAAENANRAKSDFLANMSHEIRTPMNGVIGMTELALDTELTEEQRDYLE 452
K E++ AKE A+ AN+AKSDFLANMSHEIRTPMN +IGM++L L TEL +QR+Y+E
Sbjct: 1017 KLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDRKQRNYVE 1076
Query: 453 AVQMSANALLSIIDDILDFSKIEAGRLDVELIPFDLEKVCADALRTVAVRADQKGLELLA 512
++ ++ +LL II+DILDFSKIEAG+LD+E++PF L+ + D +V+A K LELL
Sbjct: 1077 KIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAADKQLELLF 1136
Query: 513 RRGPGVPRRLLGDPGRLRQILLNLLGNAIKFTERGEIEVAV-ELAEPGAAGQVLYFCVSD 571
PGVP L GDP RL Q+L+NL+ NAIKFTERGE+ +++ ELA Q L F V D
Sbjct: 1137 SVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARDEDQVQ-LKFAVRD 1195
Query: 572 TGIGIAPEKQEHIFEAFAQEDSSTTRRFGGTGLGLTICSRLCELMGGRIWVDSVPGQGSA 631
+GIG+ E+Q +F++F+Q D+STTR++GGTGLGL IC +L ELMGG I VDS G GS
Sbjct: 1196 SGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIGVDSQFGNGST 1255
Query: 632 FHFTLQLPTDGAAAPEPERRLSGKPALLLVVANARQRCRLQGLLASWGATVVAAASGAEG 691
F+FT+ + A E+ L G A+L+V N+ R L+ L S G +V +A SG E
Sbjct: 1256 FYFTVSVKVAQNAQLNVEQELEGM-AVLVVDDNSTARDILRTTLQSMGFSVDSARSGMEA 1314
Query: 692 LALLEQGQWDGVVADSRPVDGDAGDLLEHLARSPGRVPLLMLLSPSRMRQEIARCKALGV 751
L + + + D + + D + + R + PL++++S + I + + +G+
Sbjct: 1315 LEKCAERDYRIALIDWKMPEMDGTETAARM-RELKQPPLILMVSAHANSEFIDKVEEMGI 1373
Query: 752 GHYLGKPALADELWRSLQALL-----EPA-VAGVPATVAEAAGTPPAGLEVLLAEDHPVN 805
Y+ KP A L + + L +P P + +G G +LL ED+ +N
Sbjct: 1374 NGYITKPISASRLLDGIMSALGRQGHKPVRRKAQPMDAQKLSGL--KGKRILLVEDNEMN 1431
Query: 806 QQLMRNMLERMGHRVTLARHGGEAVAAAARRRFDLVLMDMQMPEMGGEQATRLIRADEQA 865
Q++ LE++G +++A +G A+ ++ FDLVLMD QMP M G QATR +R +
Sbjct: 1432 QEVASEFLEQVGVVLSIADNGQIALEKLGQQSFDLVLMDCQMPVMDGYQATRELR---KL 1488
Query: 866 RGLAPLRIYALSAAARREDRQRGLVAGMDGYLLKPLQQKDLQEVLAGLARPGQEEGGFDY 925
GLA L + A++A A D++ L+AGM+ ++ KP++ L + L P E G +
Sbjct: 1489 PGLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTLLQYLCP--EAKGLES 1546
Query: 926 GRMLEGADRDVLQIIG-------DVFPGLARLEMA--------------------AMEEA 958
AD++V + D+ GL ++ + + +A
Sbjct: 1547 ADADAAADQEVTSLTSWPEHEDLDIDRGLQLVQNSERLYRRILERFVTSQAQAGKKIRKA 1606
Query: 959 LAAADWERLGRVAHSLRGAAANFGPSPLVQQATEVE-RLAPHQAVQPAHLAELRLALEAL 1017
LA E R+AH+L+G A N LV++A ++E +LA +A + A L + L +
Sbjct: 1607 LALGQQEDAVRLAHTLKGVAGNLSADTLVEEARQLEAKLAQGEACE-AELEAVETRLVTI 1665
Query: 1018 LQGLQQF 1024
+ ++++
Sbjct: 1666 VAAIERW 1672
Score = 44.7 bits (104), Expect = 6e-08
Identities = 58/248 (23%), Positives = 97/248 (39%), Gaps = 39/248 (15%)
Query: 178 NDRFCEISGYSREELVGRNHRVVKSGIHPPAFYQEMWDTIVHGRV-----WQGEVCNRSK 232
+D E++GY + R S I E D I+ G + ++ E R +
Sbjct: 670 SDNITELTGYPAWHFIESKKRSFGSLILDED--AERCDAIISGALAEQHAFEVEYRIRHR 727
Query: 233 DGRLYWVSATVVPFFDDLGVPYQYIAIRTDITARKLAEARLDEQLHFSRQVLDTLPVPLY 292
DG L WV +D+ G P + DIT KLA+ R+++ + +++P +Y
Sbjct: 728 DGSLRWVHEKGKASYDEDGNPVWFDGSLNDITESKLAQERIEQSREQLETITESVPSTVY 787
Query: 293 FKDTQGRYQGFNKAFADFFGIEPSLWIGRHVRDLLPP-ELAEQHVARDEEVFARGGRQSY 351
Q ++ F +G H ++L EL + + ++ RG
Sbjct: 788 ----QLVWRSERDRRFTFLSSAAMATLGFHRNEVLDNFELVAERIVEED----RG----- 834
Query: 352 EIELITPAGARYDTLYNKAALTR-PDGSVRGLV---------------GTIMDISERKRW 395
E+I R+ + KA P G +R L G +MDIS RKR
Sbjct: 835 --EIIQMLAGRHGMQWTKAFRYHFPSGELRWLEAGARGSKQQDALVWNGYLMDISGRKRM 892
Query: 396 EAEILRAK 403
E E+ +++
Sbjct: 893 ETELAQSE 900
Score = 37.0 bits (84), Expect = 1e-05
Identities = 90/452 (19%), Positives = 166/452 (36%), Gaps = 55/452 (12%)
Query: 6 LRQLKGSLGVAGEAELQPLCDKLLHLAAREDIAPDVAVALAGLP------AFLRRVGEAY 59
L+ L G +A A++ PL ++L + + ++ + L A + V Y
Sbjct: 268 LKDLNGVQYLASIAKVSPLAWRVLVITPQTELVETFLKGFSSLTLSLLVLALILLVTSYY 327
Query: 60 AQAERDQALRTRSLELSSEDLNRAYARQEQELVAREQSIASLRETANRLLGQMGLPALSP 119
+ + L +LE D ++ ++ Q+ + IA+L N +M
Sbjct: 328 SAKRLTEPLE--ALETGIVDFSKGLIKRLQKPEGVVREIATLSHKFN----EMAEVLEER 381
Query: 120 EDASLESLSQLMDTLVRERESSRIRLHQAHSSLEQQKFALDQHAIVSVTDVEGFIIEAND 179
E A L+S TL+ D+ S+T +G I + +
Sbjct: 382 EQALLDSRGNRFATLIDGMS--------------------DKSFYCSMTP-DGNIDQVSA 420
Query: 180 RFCEISGYSREELVGRNHRVVKSGIHPPAFYQEMWDTIVHGRVWQGEVCNRSKDGRLYWV 239
++ G S E L + R+ S +Q M + V +V DG L +
Sbjct: 421 GVEKVLGISPEVLKRKYQRLFSSNAINEQNWQFMEMALRGEAVPPHQVEMAGADGSLRRL 480
Query: 240 SATVVPFFDDLGVPYQYIAIRTDITARKLAEARLDEQLHFSRQVLDTLPVPLYFKDTQGR 299
+ P DD G + D+T + A A +S VL+ P + D G+
Sbjct: 481 DLFMQPLLDDEGQLISVEMLFNDVTEQFSAAA-------WSNAVLEAAPEAMLIVDESGQ 533
Query: 300 YQGFNKAFADFFGIEPSLWIGRHVRDLLPPELAEQHVARDEEVFARGGRQSY-----EIE 354
N + FG + ++ L+P H + ++F GGR +
Sbjct: 534 LVFSNSRCQELFGYSGEEMLNLNIDALIPENERHGHQGK-RQLFIEGGRDKVMANGKPLH 592
Query: 355 LITPAGARYDTLYNKAALTRPDGSVRGLVGTIMDISERKRWEAEILRAKEAAENANRAKS 414
+ G ++ + L R + +I D++E+ E +I E+ +R +
Sbjct: 593 ALKCGGEQFPVQIGLSLLPADSRGQRQVAASIRDLTEQLAVERQI------RESESRFRG 646
Query: 415 DFLANMSHEI-RTPMNGVIGMTELALD-TELT 444
++N+ + RT +NG M ++ + TELT
Sbjct: 647 -LVSNIPGAVYRTRINGTWTMEYVSDNITELT 677