Pairwise Alignments

Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 941 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella amazonensis SB2B

 Score =  306 bits (784), Expect = 4e-87
 Identities = 223/611 (36%), Positives = 321/611 (52%), Gaps = 31/611 (5%)

Query: 401 RAKEAAENANRAKSDFLANMSHEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMSANA 460
           RAK+ A+ A+R KS+FLANMSHE+RTP+NGVIG     L T L   Q +Y++ ++ SA +
Sbjct: 300 RAKKDAQEASRIKSEFLANMSHELRTPLNGVIGFARQLLKTPLHSSQMEYIKTIERSATS 359

Query: 461 LLSIIDDILDFSKIEAGRLDVELIPFDLEKVCADALRTVAVRADQKGLELLARRGPGVPR 520
           LL II+DILDFSK+EA ++ +E +PF L     D +  +A  A  KGLE +      VP 
Sbjct: 360 LLQIINDILDFSKLEANKMVLETMPFGLRASLEDTINLLAGSAHAKGLEFVVDVDANVPE 419

Query: 521 RLLGDPGRLRQILLNLLGNAIKFTERGEIEVAVELAEPGAAGQVLYFCVSDTGIGIAPEK 580
            L GD  RL Q++ NLLGNAIKFTE G + + + LA        L   V+DTGIGI PE+
Sbjct: 420 NLSGDVMRLGQVMTNLLGNAIKFTEEGSVHLKISLASLEDNNLTLRCEVTDTGIGIDPEQ 479

Query: 581 QEHIFEAFAQEDSSTTRRFGGTGLGLTICSRL-CELMGGRIWVDSVPGQGSAFHFT--LQ 637
           QE +F+AF Q DSS +RR+GGTGLGL I  RL  ++MGGRI   S  G+GS+F FT  LQ
Sbjct: 480 QELLFQAFGQADSSISRRYGGTGLGLVITKRLVVQMMGGRIGFHSEVGKGSSFWFTVPLQ 539

Query: 638 LPTDGAAAPEPERRLSGKPALLLVVANARQRCRLQGLLASWGATVVAAASGAEGLALLEQ 697
           L         P  +L G  ++LL       R  +   L  W   V  A++  E    L+ 
Sbjct: 540 LSPFPVHDTLPLEKLIGH-SVLLFEPRKLTRESIARKLKDWHMMVTLASNEDELERHLDD 598

Query: 698 GQWDGVVADSRPVDGDAGDLLEHLARSPGRVPLLMLLS----PSRMRQEIARCKALGVGH 753
             +D ++   +  +    DL  HL+R       L+LL+    P    QE+     L +  
Sbjct: 599 RHYDAILLSGQSCE-SCEDLQRHLSRVKDHTGSLLLLNDCLDPEVYTQEMEPFVDLVLQL 657

Query: 754 YLGKPALADELWRSLQALLEPAVAGVPATVAEAAGTPPAGLEVLLAEDHPVNQQLMRNML 813
            + +  LA  L   +   ++   A  PA   + +   P  L VL  +D+  N +L+  +L
Sbjct: 658 PVSELKLAQNL---IFPPVKKNAAPKPALATKPSARHP--LNVLAVDDNLANLKLIDTLL 712

Query: 814 ERMGHRVTLARHGGEAVAAAARRRFDLVLMDMQMPEMGGEQATRLIRADEQARGLAPLRI 873
           + +   V     G +AVA A  R FDL+ MD+QMP   G  ATRLIR D   R      I
Sbjct: 713 KELVANVVAVSSGDQAVALAKSRSFDLIFMDIQMPGTDGVTATRLIRQDSLNRNTP---I 769

Query: 874 YALSAAARREDRQRGLVAGMDGYLLKPLQQKDLQEVLA-GLARP---GQEEGGFDYGRML 929
            A++A A  E+R+R   +GMDGYL KP+ +  L+ V++  L RP     +    ++   L
Sbjct: 770 IAVTAHAINEERERIQASGMDGYLPKPIDEAALKGVISRWLTRPKFTHFDSNTLNWELCL 829

Query: 930 EGADR------DVLQIIGDVFPGLARLEMAAMEEALAAADWERLGRVAHSLRGAAANFGP 983
             A++      D+L+++ +  PG        +E A+A +D E +    H L GA+   G 
Sbjct: 830 SQANQKEDLAIDMLKMMLESLPGTVN----DIELAMARSDNESMLYTVHKLHGASCYCGV 885

Query: 984 SPLVQQATEVE 994
               +   ++E
Sbjct: 886 PTTQKLCQQIE 896