Pairwise Alignments

Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1021 a.a., signal transduction histidine kinase-like protein protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  362 bits (928), Expect = e-103
 Identities = 266/781 (34%), Positives = 391/781 (50%), Gaps = 47/781 (6%)

Query: 248 DDLGVPYQYIAIRTDITARKLAEARLDEQLHFSRQVLDTLPVPLYFKDTQGRYQGFNKAF 307
           D+LG+  +  +    I  R +    L++   +   V++ +PV L + D    Y+  N+ +
Sbjct: 226 DELGLLVE--SYNASIRQRIMQAKELEDSRRYIDTVINVIPVQLAYVDASRCYRFINRRY 283

Query: 308 ADFFGIEPSLWIGRHVRDLLPPELAEQHVARDEEVFARGGRQSYEIELITPAGARYDTLY 367
             + G   +  +GR V D+LPP + E  V        +G +Q ++ E        +D  Y
Sbjct: 284 LVWLGKSEAEVLGRSVTDVLPPPVEELIVPYQLRAL-QGNQQVFDAE--------FDDKY 334

Query: 368 NKAALTRP---DGSVRGLVGTIMDISERKRWE--------------AEILRAKEAAENAN 410
            +A        DG V G    + D++  K  E              A+++ A+E AE A+
Sbjct: 335 FQATYVPDVTNDGEVVGFFACVEDLTPIKANERKIESYALELEHKNADLVEAREKAEAAS 394

Query: 411 RAKSDFLANMSHEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMSANALLSIIDDILD 470
           R K+DFLA MSHEIRTPMNGV+G+  L   TEL+ +Q+ YL+    SA +LL++++DILD
Sbjct: 395 RIKADFLACMSHEIRTPMNGVLGILSLLEKTELSIQQKHYLDVASTSAESLLTLLNDILD 454

Query: 471 FSKIEAGRLDVELIPFDLEKVCADALRTVAVRADQKGLELLARRGPGVPRRLLGDPGRLR 530
           FSKIE+G+ +++ +PFDL ++  D ++  A+RA+ KGL+LL        R + GDPGR+R
Sbjct: 455 FSKIESGKFEIDEVPFDLIQLLDDFIQPFAIRAEAKGLKLLLDISGIHLRWVRGDPGRIR 514

Query: 531 QILLNLLGNAIKFTERGEIEVAVELAEPGAAGQVLYFCVSDTGIGIAPEKQEHIFEAFAQ 590
           Q+L+NL+ NAIKFTE G I V V+ +E  A G  L   + DTGIGI+ +KQE +F  F Q
Sbjct: 515 QVLVNLVSNAIKFTEVGWIAVRVQASEDTANGVSLMVSIEDTGIGISKDKQEVLFSPFTQ 574

Query: 591 EDSSTTRRFGGTGLGLTICSRLCELMGGRIWVDSVPGQGSAFHFTLQLPTDGAAAPEPER 650
            DS+TTR FGGTGLGL+I  RLCELM G I V S    GS F F L+L ++ A+  E   
Sbjct: 575 ADSTTTRHFGGTGLGLSIAKRLCELMDGDIRVISAEDAGSTFKFHLRLKSEAASGAEWPP 634

Query: 651 RLSGKPALLLVVANARQRCRLQGLLASWGATVVAAASGAEGLALLEQGQWDGVVADSRPV 710
            L+ +  LL     A +R   + LL SW        S  E          D ++      
Sbjct: 635 ALNCRAPLLAGELGASERMLFE-LLDSWQLRPALLESNTELAQTPALAAADWLIYSVPEH 693

Query: 711 DGDAGDLLEHLARSPGRVPLLMLLSPSRMRQEIARCKALGVGHYLGKPALADELWRSLQA 770
                  L+ +A       L  L   S  +Q       L   HYL +P  A      L  
Sbjct: 694 LVSITQELQKMAAFATEKGLKFLAIISHRQQIGLAPTILSSCHYLCRPMQA----LKLVD 749

Query: 771 LLEPAVAGVPATVAEAAGTPPAGLEVLLAEDHPVNQQLMRNMLERMG-HRVTLARHGGEA 829
           +L  +         +         ++LL ED+ VNQ +   ML  +G   V +  +G +A
Sbjct: 750 ILSDSDGNDVVLPDDTQSQLNDSAQILLVEDNKVNQMVALGMLRNLGLKHVEVVTNGLQA 809

Query: 830 VAAAARRRFDLVLMDMQMPEMGGEQATRLIRADEQARGLAPLRIYALSAAARREDRQRGL 889
           +AA   R++DL+LMD  MPEM G QAT+ IR  E  +    ++I A++A A + DR+  L
Sbjct: 810 LAALQHRQYDLILMDCLMPEMDGYQATQAIRKGEAGQKHKDIKIVAMTANAMKGDRETCL 869

Query: 890 VAGMDGYLLKPLQQKDLQEVL-------AGLARPGQEEGG----FDYGRMLE--GADRDV 936
            AGM+ Y+ KPL Q ++  VL       +    P          FD    LE    D ++
Sbjct: 870 EAGMNDYIAKPLHQAEVARVLERYIPLDSTSCAPSNPLSADTLLFDRHCALELMSGDSEL 929

Query: 937 LQIIGDVFPGLARLEMAAMEEALAAADWERLGRVAHSLRGAAANFGPSPLVQQATEVERL 996
           L  I  VF     + + A E A+   D+  +    H+++GAA N   SPL   A E+E  
Sbjct: 930 LGDILKVFAEEMAVYLEAFESAMGRRDFAAVRTAVHAIKGAAGNLCMSPLAGVAKEMEMA 989

Query: 997 A 997
           A
Sbjct: 990 A 990