Pairwise Alignments

Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1548 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  365 bits (936), Expect = e-104
 Identities = 260/704 (36%), Positives = 354/704 (50%), Gaps = 23/704 (3%)

Query: 233  DGRLYWVSATVVPFFDDLGVPYQYIAIRTDITARKLAEARLDEQLHFSRQVLDTLPVPLY 292
            DG + W          D  +  + + +  DIT  K  +A L +   + R ++ + P  + 
Sbjct: 566  DGEVRWADVRCA-LIGDRDITPRRVTLINDITELKEQQAELKDTEAWYRGIVHSAPDAMV 624

Query: 293  FKDTQGRYQGFNKAFADFFGIEPSLWIGRHVRDLLPPELAEQHVARDEEVFARGGR---Q 349
              D +GR    N       G E     G  V   LP E+ E+HV    +  A   +    
Sbjct: 625  VVDGEGRIVLCNPQLERLLGYEMGELTGHLVEQFLPEEVRERHVKLRNDFLASPLQVIGH 684

Query: 350  SYEIELITPAGARYDTLYNKAALTRPDGSVRGLVGTIMDISERKRWEAEILRAKEAAENA 409
              E+  +   G R     + + L   D       G + DIS RKR EAE+ RAKE AE A
Sbjct: 685  EREVIGVRKDGTRLPLEISLSKLPPSDRHPMSACGALRDISLRKRSEAELRRAKEMAEEA 744

Query: 410  NRAKSDFLANMSHEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMSANALLSIIDDIL 469
             R KSDFLANMSHEIRTPMN +IGM  LAL TEL   Q DY+  ++ S   LL I++DIL
Sbjct: 745  TRLKSDFLANMSHEIRTPMNAIIGMAHLALKTELDPRQADYVRKIRASGQHLLGILNDIL 804

Query: 470  DFSKIEAGRLDVELIPFDLEKVCADALRTVAVRADQKGLELLARRGPGVPRRLLGDPGRL 529
            DFSKIEAG+L VE   F+LE V       V+ +A  KGLE +      VP  L GDP RL
Sbjct: 805  DFSKIEAGKLTVENTEFELETVLDTVANLVSEKAATKGLEFVLDVAANVPPVLRGDPLRL 864

Query: 530  RQILLNLLGNAIKFTERGEIEVAVELAEPGAAGQVLYFCVSDTGIGIAPEKQEHIFEAFA 589
             QIL+N   NA+KFTE GEI + VE  E G    +L F V DTGIG+  E++  +F +F 
Sbjct: 865  GQILINYANNAVKFTEHGEIVIHVETLETGDTDVLLRFAVRDTGIGLTDEQKARLFVSFQ 924

Query: 590  QEDSSTTRRFGGTGLGLTICSRLCELMGGRIWVDSVPGQGSAFHFTLQLPT-DGAAAPEP 648
            Q D+STTR++GGTGLGL I  +L +LMGG + VDSVPG GS F FT +L    G  A  P
Sbjct: 925  QADTSTTRKYGGTGLGLAIAKKLADLMGGGVGVDSVPGGGSTFWFTARLGLGSGRRALLP 984

Query: 649  ERRLSGKPALLLVVANARQRCRLQGLLASWGATVVAAASGAEGLALLEQGQ-----WDGV 703
               L G   +L+V  N + R  L  +L       V A  G   L LL + +     +  V
Sbjct: 985  RIDLRGL-RVLVVDDNPQARMVLAHMLEGMTFRPVMADGGETALDLLREARDADTPFGMV 1043

Query: 704  VADSRPVDGDAGDLLEHLARSPGRVPLLMLLSPSRMRQEIARCKALGVGHYLGKPALADE 763
              D +    D  +   ++      +P+ ++ +  R  +  A  + +GV   L KP     
Sbjct: 1044 FLDWQMPGMDGLETARNIRTLAPDLPVAIVTAHGR-EEIFAASEGVGVSAVLVKPVQPSL 1102

Query: 764  LWRSLQALLEPAVAGVPATVAEAAGTPPA------GLEVLLAEDHPVNQQLMRNMLERMG 817
            L+ +   LL  AV   P        T PA      G  VLL ED+ +N+++   +L   G
Sbjct: 1103 LFDTAMRLL-GAVHPAPRAAVPPPDTRPAMLDGVRGSRVLLVEDNELNREVALGLLAEAG 1161

Query: 818  HRVTLARHGGEAVAAAARRRFDLVLMDMQMPEMGGEQATRLIRADEQARGLAPLRIYALS 877
                 A  G +AV       +DLVLMD+QMP M G +ATR+IR   +A  L    I A++
Sbjct: 1162 LVPDAAEDGAQAVRMVMEGDYDLVLMDVQMPVMDGYEATRIIRRSREADSLP---IVAMT 1218

Query: 878  AAARREDRQRGLVAGMDGYLLKPLQQKDL-QEVLAGLARPGQEE 920
            A A R DR+  L AGM+ ++ KP+   +L   ++  L R G+ E
Sbjct: 1219 ANAMRSDREACLAAGMNDHVAKPIDPDELFAALIRWLPRRGEAE 1262



 Score = 28.9 bits (63), Expect = 0.003
 Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 28/163 (17%)

Query: 265 ARKLAEAR--LDEQLHFSRQVLDTLPVPLYFKDTQGRYQGFNKAFADFFGIEPSLWIGRH 322
           A +L E+R  L     F R V +T  + +  +         N AF+DF GI      GR 
Sbjct: 443 ATELEESRELLRRSEAFFRAVFETAGIGIVSERRGLGIDRANPAFSDFIGISEPELRGRD 502

Query: 323 VRDLLPP---ELAEQHVAR------DEEVFARGGRQSYEIELITPAGARYD-TLYNKAAL 372
           + D   P   E  E  ++R      +  V   G  +   ++   P  AR   T+  +   
Sbjct: 503 LEDFFHPDDREALEALLSRLDPDKLEYAVPRHGNPERDGLDAGEPDQARSTITVRAEHRY 562

Query: 373 TRPDGSVR------GLVG----------TIMDISERKRWEAEI 399
            RPDG VR       L+G           I DI+E K  +AE+
Sbjct: 563 LRPDGEVRWADVRCALIGDRDITPRRVTLINDITELKEQQAEL 605