Pairwise Alignments

Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  311 bits (796), Expect = 3e-88
 Identities = 288/959 (30%), Positives = 449/959 (46%), Gaps = 88/959 (9%)

Query: 131  MDTLVRERESSRIRLHQAHSSLEQQKFALDQHAIVSVTDVEGFIIEANDRFCEISGYSRE 190
            + T + ER+ ++I  ++  + L     A  +  I++  D +G I   N     +  YS E
Sbjct: 600  LQTDITERKLAQIEKNRIATLLTNVLDAASEMTIIAA-DPQGIITIFNRGAERMLWYSAE 658

Query: 191  ELVGRN--------HRVVKSGIHPPAFYQEM---WDTIVHGRVWQGEVCNR----SKDGR 235
            E++G+           +          Y +    +DT VH    +G          KDG 
Sbjct: 659  EIIGKTTPAPFHIADEIAARAAELSVEYGQKIQGFDTFVHKAREEGSETRTWTYVRKDGS 718

Query: 236  LYWVSATVVPFFDDLGVPYQYIAIRTDITARKLA-EARLDEQLHFSRQVLDTLPVPLYFK 294
               +S +V     + G    Y+ I  DI+      EA L    H S+           + 
Sbjct: 719  QLPISLSVTAMRGNDGEILGYLGIGVDISQIVAQQEALLTASNHLSKAAEVAKLGIWTWN 778

Query: 295  DTQGRYQGFNKAFADFFGIEPSLWIG---RHVRDLLPPELAEQHVARDEEVFARGGRQSY 351
                  Q  ++ FA +   E     G    H R  + P+     V   EE   R      
Sbjct: 779  LLDNSLQWNDRMFAMYDQPESLKQQGLSYEHWRMRVHPD----DVIEAEETLKRAVEHDE 834

Query: 352  EIE-----LITPAGARYDTLYNKAALTRPDGSVRGLVGTIMDISERKRWEAEILRAKEAA 406
              E     L T    RY     K    R  G V  ++G  +DI+ +++ E  +  AK+ A
Sbjct: 835  PYEPIFRILTTDGEVRYVQAAAKIERDR-QGHVIRVIGINIDITAQRQLEKTLRNAKQEA 893

Query: 407  ENANRAKSDFLANMSHEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMSANALLSIID 466
            + AN AKS FLANMSHEIRTPMN V+GM +L   T L+ +Q+ Y+   Q +A +LL +++
Sbjct: 894  DTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAKSLLGLLN 953

Query: 467  DILDFSKIEAGRLDVELIPFDLEKVCADALRTVAVRADQKGLELLARRGPGVPRRLLGDP 526
            DILDFSKI+AG+L ++L P  +E +  D    ++       +E++      +P  LL D 
Sbjct: 954  DILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAWLLADQ 1013

Query: 527  GRLRQILLNLLGNAIKFTERGEIEVAVELAEPGAAGQVLYFCVSDTGIGIAPEKQEHIFE 586
             RL+QIL+NL GNA+KFT  G++ V +E     A    + F + D+GIGI+ E+ E IF 
Sbjct: 1014 LRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEEQIERIFT 1073

Query: 587  AFAQEDSSTTRRFGGTGLGLTICSRLCELMGGRIWVDSVPGQGSAFHFTLQLPTDGAAAP 646
             F Q +SST+RRFGGTGLGL I  RL ELMGG++ V S  G GS F F L  P     A 
Sbjct: 1074 GFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVMEVEA- 1132

Query: 647  EPERRLSGKPALLLVVANARQRCRLQGLLASWGATVVAAASGAEGLALLEQG-----QWD 701
             P   LSG   +L+V  N      L  +L+ +G  V  A+ G + +  ++Q      Q+D
Sbjct: 1133 NPRADLSGY-RILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATANAQQFD 1191

Query: 702  GVVADSRPVDGDAGDLLEHL--ARSPGRVPLLMLLSP--SRMRQEIARCKALGVGHYLGK 757
             V+ D R  D D     E L  A +    PL+++L+     +  E      +   ++L K
Sbjct: 1192 VVLMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQHINNVPFVNFLTK 1251

Query: 758  PALADELWRSLQALLEPAVAGVPATVAEAAGTPP-----AGLEVLLAEDHPVNQQLMRNM 812
            P  +       Q L E  +  +     +A   P      AGL +L+ ED+ +N++++  +
Sbjct: 1252 PVTS-------QILAEAVLNAIEGKTMDANPKPRSQRLLAGLTLLVVEDNQLNREVIDEL 1304

Query: 813  LERMGHRVTLARHGGEAVAAA--ARRRFDLVLMDMQMPEMGGEQATRLIRADEQARGLAP 870
            L   G  V LA  G E V     +   FD V+MDMQMP++ G +ATR IRAD +      
Sbjct: 1305 LTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRIRADGR---FDQ 1361

Query: 871  LRIYALSAAARREDRQRGLVAGMDGYLLKPLQQKDLQEVLAGLAR-PGQEEGGF------ 923
            L I A++A A + D+Q  L AGM+ ++ KP+   D+Q++L  + R  G++   F      
Sbjct: 1362 LPILAMTANASQADKQECLEAGMNAHVSKPI---DMQQLLPNILRLVGRDAAQFAEPESM 1418

Query: 924  --DYGRMLEGAD-----RDVLQIIG--DVF---------PGLARLEMAAMEEALAAADWE 965
              D    LEG       R +L+  G   VF         P + + +++  +++    D+ 
Sbjct: 1419 HLDAQHNLEGETLLDDIRLILRRFGGNQVFFEKMASSFAPEMIK-QLSLFKQSTKTFDYA 1477

Query: 966  RLGRVAHSLRGAAANFGPSPLVQQATEVERLAPHQAVQPAHLAELRLALEALL-QGLQQ 1023
                ++H+++G A+NFG   L   A  +E+    + ++   +      LE+L+ Q ++Q
Sbjct: 1478 TTAAISHAIKGIASNFGARRLAVHAAFLEKQFKQEGLELLEIKRWTDTLESLINQSIEQ 1536



 Score =  135 bits (341), Expect = 2e-35
 Identities = 93/298 (31%), Positives = 144/298 (48%), Gaps = 32/298 (10%)

Query: 137 ERESSRIRLHQAHSSLEQQKFALD---QHAIVSVTDVEGFIIEANDRFCEISGYSREELV 193
           ER+ ++ R H    +L + +  LD   Q    SVTD++G I++ N+ FC ISGY+REELV
Sbjct: 476 ERQVAK-RTHALQQALLENQALLDTINQQLHYSVTDLDGVILDVNEHFCLISGYAREELV 534

Query: 194 GRNHRVVKSGIHPPAFYQEMWDTIVHGRVWQGEVCNRSKDGRLYWVSATVVPFFDDLGVP 253
           G+ H V+KSG H  AF++ MW+ I  G+ W GE+CNR KD +L W    +   FD+ G  
Sbjct: 535 GKTHAVLKSGEHDAAFWKAMWEQIKAGKSWHGEICNRGKDQQLKWFDTVIGSVFDEHGQV 594

Query: 254 YQYIAIRTDITARKLAEARLDEQLHFSRQVLDTL-PVPLYFKDTQGRYQGFNKAFADFFG 312
            +++A++TDIT RKLA+   +        VLD    + +   D QG    FN+      G
Sbjct: 595 ERFVALQTDITERKLAQIEKNRIATLLTNVLDAASEMTIIAADPQGIITIFNR------G 648

Query: 313 IEPSLW------IGR------HVRDLLPPELAEQHVARDEEV---------FARGGRQSY 351
            E  LW      IG+      H+ D +    AE  V   +++             G ++ 
Sbjct: 649 AERMLWYSAEEIIGKTTPAPFHIADEIAARAAELSVEYGQKIQGFDTFVHKAREEGSETR 708

Query: 352 EIELITPAGARYDTLYNKAALTRPDGSVRGLVGTIMDISERKRWEAEILRAKEAAENA 409
               +   G++     +  A+   DG + G +G  +DIS+    +  +L A      A
Sbjct: 709 TWTYVRKDGSQLPISLSVTAMRGNDGEILGYLGIGVDISQIVAQQEALLTASNHLSKA 766