Pairwise Alignments

Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1119 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  291 bits (744), Expect = 2e-82
 Identities = 278/966 (28%), Positives = 442/966 (45%), Gaps = 113/966 (11%)

Query: 96   QSIASLRETANRLL-GQMGLPA-------LSPEDASLESLSQLMDTLVRERESSRIRLHQ 147
            +++  L   + R+L G++G+         ++    +  ++   +D   +  E++ IRL+ 
Sbjct: 177  RNLTQLTSASKRILAGEIGVRVPVKGKDEIAQMTRAFNNMVDKVDARTKALEAANIRLNT 236

Query: 148  AHSSLEQQKFALDQHAIVSVTDVEGFIIEANDRFCEISGYSREELVGRNHRVVKSGIHPP 207
               S      A+D   I++     G I + N     + GY+  EL+G+N  +       P
Sbjct: 237  ILES------AVDGFVIINEF---GIITDINPAVSRLFGYAHNELIGQNVSIFMPFDQRP 287

Query: 208  ---AFYQEMWDTIVHGRVWQG-EVCNRSKDGRLYWVSATVVPFFDDLGVPYQYI------ 257
                + Q+ + T V   +    E+  + KDG+L+ ++ +V     D    +  +      
Sbjct: 288  LHDGYIQQYFTTHVAKIIGTSRELTAQRKDGQLFPIALSVSQMSIDNRAMFIGLVKDLSE 347

Query: 258  AIRTDITARKLAEARLDEQLHFSRQVLDTLPVPLYFKDTQGRYQGFNKAFADFFGIEPSL 317
            A R +I A K  E+ L   L  S+  L T+       D  G+   FN A    FG     
Sbjct: 348  AKRKEIAAAK-TESVLLATLAASQDCLITI-------DMSGKVIEFNLAATRLFGYSREE 399

Query: 318  WIGRHVRDLLPPELAEQHVARDEEVFARGGRQSY---EIELITPAGARYDTLYNKAALTR 374
             +G  + DL+ PE  +Q   R  E + R G        +EL+    A          +  
Sbjct: 400  AVGALLEDLIIPEDKQQGHKRGIERYRRTGEGKMLNKRVELLARCKAGNLIPIELEVVPI 459

Query: 375  PDGSVRGLVGTIMDISERKRWEAEILRAKEAAENANRAKSDFLANMSHEIRTPMNGVIGM 434
              G        + DISERK  E ++ +AKE AE  ++ KS FLA MSHEIR+P+N ++G 
Sbjct: 460  QLGDEVLFTAFLRDISERKANEQKLQQAKEQAEQGSKVKSRFLATMSHEIRSPLNAILGG 519

Query: 435  TELALDTELTEEQRDYLEAVQMSANALLSIIDDILDFSKIEAGRLDVELIPFDLEKVCAD 494
             EL LD+ L+++QR +    + + +ALL  I+DILDFSKIEAG++ +E   F+ +K+ A 
Sbjct: 520  VELLLDSSLSKDQRIHANIAREAGSALLHTINDILDFSKIEAGQMVLESHEFEPDKLVAQ 579

Query: 495  ALRTVAVRADQKGLELLARRGPGVPRRLLGDPGRLRQILLNLLGNAIKFTERGEIEVAVE 554
             L+ +  +A +KGLEL++     VPR ++GD  RLRQ+L NL+ NAIKFT  G I V + 
Sbjct: 580  VLQILEPKAFEKGLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTASGTITVEMW 639

Query: 555  LAEPGAAGQVLYFCVSDTGIGIAPEKQEHIFEAFAQEDSSTTRRFGGTGLGLTICSRLCE 614
            + +       LY  V+D+GIGI+ E Q  +F+ F+Q   +    + GTGLGL ICS L  
Sbjct: 640  IPDNHQTEVQLYCRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICSELIT 699

Query: 615  LMGGRIWVDSVPGQGSAFHFTLQLPTDGAAAPEPERRLSGKPALLLVVANARQRCRLQGL 674
            +MGG I + S  GQGS F F + L           + L G          A  R  L   
Sbjct: 700  MMGGTIELQSELGQGSRFTFYVSL-----------QLLEGNFCHSHYFP-AHSRVLLAHH 747

Query: 675  LASWGATVVAAASGAEGLALLEQGQWDGVVADSRPVDG-------DAGDLLE-------- 719
             A+W  ++V+      G+  +E   W   +  ++ + G       D G  L+        
Sbjct: 748  DATW-LSLVSKQYSQYGVETVEVMDWPS-IKRAKKIKGQFNLILLDEGFFLDVNEQDVNR 805

Query: 720  ----HLARSPGRVPLLMLLSPSRMRQEIARCKA-LGVGHYLGKPALADELWRSLQALLEP 774
                HL      V L+     S M  EI    A LG+   + KP     L R++Q  L  
Sbjct: 806  LRQAHLTADGSMVALV-----SGMSTEITHSLATLGLDQVVNKP-----LSRAMQLALLS 855

Query: 775  AVAGVPATVAEAAGTPPAGLEVLLAEDHPVNQQLMRNMLERMGHRVTLARHGGEAVAAAA 834
              A       E          +LLAED P NQ +   ML + G  +T A +G EAV   A
Sbjct: 856  KDALANEFEEEYVAQEKFQGHILLAEDSPANQIIAGTMLTKAGFDITYACNGLEAVKLVA 915

Query: 835  RRRFDLVLMDMQMPEMGGEQATRLIRADEQARGLAPLRIYALSAAARREDRQRGLVAGMD 894
             + FDLVLMD++MPEM G +AT +I  +   +      I A+SA   +E+ +     GM 
Sbjct: 916  EKPFDLVLMDVRMPEMDGLEATEVILQNHPEQ-----VILAMSANVMKEEIEHCYRVGMK 970

Query: 895  GYLLKPLQQKDLQEVL------AGLARPGQEEGGFDYGRMLEGADRDVLQIIGDVFPGLA 948
             ++ KP++QK L   +      A ++ P   +   +   +L+       Q++ ++   L 
Sbjct: 971  DFIAKPVKQKTLLHAIQKWLPNAVVSLPSSHKPAENTASLLDE------QLLAELEQTLG 1024

Query: 949  RLEMAAMEEALAAADWERLGRV--------------AHSLRGAAANFGPSPLVQQATEVE 994
            +  ++ M         +RL ++              AH+L+ ++ +FG + L   A ++E
Sbjct: 1025 KASLSNMMTIFCDELAQRLNQLSELDSTQVDEIEDQAHTLKSSSGSFGATALFLLAQKLE 1084

Query: 995  RLAPHQ 1000
              A  Q
Sbjct: 1085 ACARQQ 1090