Pairwise Alignments

Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1686 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  326 bits (836), Expect = 8e-93
 Identities = 296/936 (31%), Positives = 442/936 (47%), Gaps = 94/936 (10%)

Query: 144  RLH-QAHSSLEQQKF-ALDQHAIVS--VTDVEGFIIEANDRFCEISGYS-REELVGRNHR 198
            R+H +   SL   KF AL   A+ +  +TD +G IIE N     +  Y  + +L+GR   
Sbjct: 696  RIHTEEQLSLSMNKFQALFDSAVDACVITDRQGVIIECNSALLSLLKYQHKHQLIGRRTL 755

Query: 199  VVKSGIHPPAFYQEMWDTIVHGRVWQGEVCNRSKDGRLYWVSATVVPFFDDLGVPYQYIA 258
            V     +PP   +   +T+   R+         + G+L + +  V    + + V      
Sbjct: 756  VY----YPPHLGETDSETLFEQRLQ-----TVLEQGQLRFEADFVTSMAEIVNVEVTLKR 806

Query: 259  IRT-----------DITARKLAEARLDEQLHFSRQVLDTLPVPLYFKDTQGRYQGFNKAF 307
            I             D++ RKL  A L+ +    + VL   P+ ++    +G  +  N+  
Sbjct: 807  IELNGSLFVLGTYHDLSERKLMNALLERERDLLKHVLGRSPIGVWIC-IEGVCRYVNEQI 865

Query: 308  ADFFGIEPSLWIGRHVRDLLPP------ELAEQHVARDEEVFARGGRQSYEIELITPAGA 361
             +  G++    +G+ V  +          ++E  +++D  VF        E +L    G 
Sbjct: 866  TEMTGLQ----VGQSVYPIFAQPDDYRCHISELDLSQDSTVF--------ETQLFDCKGQ 913

Query: 362  RYDTLYNKAALTRPDGSVRGLVGTIMDISERKRWEAEILRAKEAAENANRAKSDFLANMS 421
            R D L   A  T  DG    L   + DI++ K  + E+  AK+AAE ANRAKSDFLANMS
Sbjct: 914  RRDVLLT-AYHTVQDGQNANLCWAL-DITDTKSIQDELAIAKDAAEAANRAKSDFLANMS 971

Query: 422  HEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMSANALLSIIDDILDFSKIEAGRLDV 481
            HEIRTPMN ++GM+ L L TEL+ +QRDY+  V  +A +LL I++DILDFSKIEA ++D+
Sbjct: 972  HEIRTPMNAILGMSYLVLQTELSSKQRDYVGKVHQAAGSLLGILNDILDFSKIEAEKMDI 1031

Query: 482  ELIPFDLEKVCADALRTVAVRADQKGLELLARRGPGVPRRLLGDPGRLRQILLNLLGNAI 541
            E   FDL+ V ++    V+ + ++K +  +    P +PR   GD  RL QIL+N   NA+
Sbjct: 1032 ECAVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGDGLRLGQILINYCNNAV 1091

Query: 542  KFTERGEIEVAVELAEPGAAGQV-LYFCVSDTGIGIAPEKQEHIFEAFAQEDSSTTRRFG 600
            KF+   +  V +         QV L FCV D GIGI  +KQ  +F +F Q D+ST+R +G
Sbjct: 1092 KFS-HNDSNVVLSCESKVHGEQVELTFCVEDFGIGIPEQKQGVLFGSFEQVDASTSREYG 1150

Query: 601  GTGLGLTICSRLCELMGGRIWVDSVPGQGSAFHFTLQLPTDGAAAPEPER---RLSGKPA 657
            GTGLGL IC RL  LMGG +W +S  G GS F+  L L  D A   +P      L+G+ A
Sbjct: 1151 GTGLGLAICKRLAHLMGGEVWCESELGVGSRFYVRLTL--DCADTYDPNALFDPLAGETA 1208

Query: 658  LLLVVANARQRCRLQGLLASWGATV---VAAASGAEGLALLEQGQWDGVVADSRPVDGDA 714
             L+ +       RL  LL   G +    V +A     +A L+Q     ++          
Sbjct: 1209 KLIGL-----HPRLDKLLTIHGVSANMQVESADVGTVIAQLKQSSTRQLLICD--YSAFV 1261

Query: 715  GDLLEHLARSPGRVPLLM--LLSPSRMRQEIA-RCKALGVGHYLGKPALADELWRSLQAL 771
             +LLE LA +     LL+  L     +RQ I    + +     L   A+ + L   L   
Sbjct: 1262 PELLEALAVNQASRMLLIGQLSDQDSLRQLIENNDRVISQTKPLTPIAIGNALLSLLGHQ 1321

Query: 772  LEPAVAGVPATVAEAAGTPPAGLEVLLAEDHPVNQQLMRNMLERMGHRVTLARHGGEAVA 831
             E            A  T  AG EVLL ED+ +NQ+L   +L + G  VT+A HG EA+ 
Sbjct: 1322 SEDGRQVQQDHSLHALKTQLAGAEVLLVEDNQLNQELAVELLRQAGINVTVANHGLEAIE 1381

Query: 832  AAARRRFDLVLMDMQMPEMGGEQATRLIRADEQARGLAPLRIYALSAAARREDRQRGLVA 891
               ++ FD VLMD QMP + G +ATR IR   Q    A L I A++A A   D ++ L  
Sbjct: 1382 RVEQQYFDCVLMDCQMPVLDGYEATRRIRELPQ---FANLPILAMTANAMSGDIEKALAV 1438

Query: 892  GMDGYLLKPLQQKDLQEVLAGLARPGQEEG------------------GFDYGRMLEGAD 933
            GM+  + KP+  KDL  V+A    P Q +                   G      L   D
Sbjct: 1439 GMNDQITKPVHVKDLYTVMARWITPKQRKSVPLVLKRSTHAQDLPQLEGLSIQNGLSHCD 1498

Query: 934  RD--VLQIIGDVFPGLARLEMAAMEEALAAADWERLGRVAHSLRGAAANFGPSPLVQQAT 991
             +  +   +  +F   ++  +   + A    + + L    H+L+G AAN G   + + A+
Sbjct: 1499 HNESLYSHLLGLFINTSKTLLGQQQRAWQEENADELRLSLHTLKGVAANVGAMEISRLAS 1558

Query: 992  EVE---RLAPHQAVQPAH--LAELRLALEALLQGLQ 1022
            E+E     A        H  L  L+  L+ L+ GL+
Sbjct: 1559 ELELQCLTAKRSFTVELHEQLLALQTELQCLVSGLE 1594