Pairwise Alignments

Query, 556 a.a., Tfp pilus assembly protein PilF from Dechlorosoma suillum PS

Subject, 541 a.a., TPR domain protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  255 bits (651), Expect = 4e-72
 Identities = 174/455 (38%), Positives = 233/455 (51%), Gaps = 16/455 (3%)

Query: 86  GKTEMALQLTLRQVELEPGNALAYDNLGQIFRQLGQYEGAELSLRNALLLAPDTPNLHNN 145
           G++  A  L  R +     + L   NLG   R  G  + A  +    L   P       N
Sbjct: 68  GRSAAAAGLFRRAMARCGDDPLMLHNLGVALRGAGLIDAAAAAWEGVLRGCPQRFATLFN 127

Query: 146 LGLILLDQNKLAEAEQAFLQALRLAPQHADAMTNLSTVLQAQGRTAEALEHCRRAAALAP 205
           L  +  DQ +  EA   + +A    P  +DA  NL  +L  +G  A+A E   +AA++ P
Sbjct: 128 LARLRDDQGRGEEALALYRRACLADPAASDAAYNLGNLLARRGALAQAAEVLGKAASVTP 187

Query: 206 RSAVTWTNLGNVLKSMGLHQEALEAQRQAIALAPDYALAHWNYAMSLLALGQLEAGWQEY 265
             A   TNLG VL+ +G    AL  QR+A+AL PD A A WN A  LLAL   + G+  Y
Sbjct: 188 HDARIQTNLGIVLRRLGDAAGALACQRRAVALDPDLADAQWNLANLLLALDDYDEGFARY 247

Query: 266 EWGAAAGTRTRFAATLPRWQGEDLAGKHLLLRAEQGLGDTLQFVRFAPELQRRGAKVTLE 325
           EW             L  W+GEDLAG+ LL+  EQG GD +Q  RF P L  RGA+V +E
Sbjct: 248 EWRKRRAPWRLVDPPLAEWRGEDLAGRRLLVGLEQGAGDMIQAARFLPVLAGRGARVIVE 307

Query: 326 CQPSLIPLLQGVAGIDHLVAQTGELPADAWGCQCYLPLMSLPHLLHIGLADLPGPI-PYL 384
              +L  LL  V G++ +VA      A A    C++   SLP+ L +  ADL     PYL
Sbjct: 308 APDALAGLLATVDGVESVVAPGAWAAARA---TCHIRAFSLPYRLGLRFADLAATAGPYL 364

Query: 385 PLEAGRVRHWQDMLGPRSRFR-VGLAWAGNPRHRNDHQRSCPLAQFVELLAVPGVEFISL 443
            +           L P  +   VGL W+GNP    +  R+ PLA F  L AV G+ F SL
Sbjct: 365 RVPPRTPT--PPALPPGGQGPCVGLCWSGNPDFTENAVRAAPLAAFAPLTAVEGLTFFSL 422

Query: 444 Q-------LPAAELPQGLRDVTAGIRDFADTAAIVSQLDLVISVDTAIIHLAGALGRPAW 496
           Q       L A+ LP  + D+   + D+A TAA +++LD+V++ DT++ HLAGALGRP  
Sbjct: 423 QKGPAVAELAASGLP--VIDLDPWLVDYAATAAAMARLDMVVTTDTSVAHLAGALGRPCL 480

Query: 497 LLLPRDADWRWLQERQDSPWYPSLKLYRQKMPGQW 531
           LLL    DWRW   R+ SPWYPSL+L RQ+  G W
Sbjct: 481 LLLAAHCDWRWGIGRETSPWYPSLRLLRQERLGDW 515



 Score = 55.5 bits (132), Expect = 5e-12
 Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 2/172 (1%)

Query: 16  SQGDMAGAEQAFAAA-AQLAPQAWQVHFNLGMCRDRLGRREAAFTAYEKAYQLAPDHVPC 74
           ++G  A A   F  A A+       +H NLG+     G  +AA  A+E   +  P     
Sbjct: 66  AEGRSAAAAGLFRRAMARCGDDPLMLH-NLGVALRGAGLIDAAAAAWEGVLRGCPQRFAT 124

Query: 75  ITNLAVNAFNLGKTEMALQLTLRQVELEPGNALAYDNLGQIFRQLGQYEGAELSLRNALL 134
           + NLA    + G+ E AL L  R    +P  + A  NLG +  + G    A   L  A  
Sbjct: 125 LFNLARLRDDQGRGEEALALYRRACLADPAASDAAYNLGNLLARRGALAQAAEVLGKAAS 184

Query: 135 LAPDTPNLHNNLGLILLDQNKLAEAEQAFLQALRLAPQHADAMTNLSTVLQA 186
           + P    +  NLG++L      A A     +A+ L P  ADA  NL+ +L A
Sbjct: 185 VTPHDARIQTNLGIVLRRLGDAAGALACQRRAVALDPDLADAQWNLANLLLA 236



 Score = 54.3 bits (129), Expect = 1e-11
 Identities = 44/154 (28%), Positives = 61/154 (39%)

Query: 18  GDMAGAEQAFAAAAQLAPQAWQVHFNLGMCRDRLGRREAAFTAYEKAYQLAPDHVPCITN 77
           G +  A  A+    +  PQ +   FNL   RD  GR E A   Y +A    P       N
Sbjct: 102 GLIDAAAAAWEGVLRGCPQRFATLFNLARLRDDQGRGEEALALYRRACLADPAASDAAYN 161

Query: 78  LAVNAFNLGKTEMALQLTLRQVELEPGNALAYDNLGQIFRQLGQYEGAELSLRNALLLAP 137
           L       G    A ++  +   + P +A    NLG + R+LG   GA    R A+ L P
Sbjct: 162 LGNLLARRGALAQAAEVLGKAASVTPHDARIQTNLGIVLRRLGDAAGALACQRRAVALDP 221

Query: 138 DTPNLHNNLGLILLDQNKLAEAEQAFLQALRLAP 171
           D  +   NL  +LL  +   E    +    R AP
Sbjct: 222 DLADAQWNLANLLLALDDYDEGFARYEWRKRRAP 255



 Score = 38.5 bits (88), Expect = 7e-07
 Identities = 35/121 (28%), Positives = 43/121 (35%)

Query: 3   RLDELLQQGQQRFSQGDMAGAEQAFAAAAQLAPQAWQVHFNLGMCRDRLGRREAAFTAYE 62
           R   L    + R  QG    A   +  A    P A    +NLG    R G    A     
Sbjct: 121 RFATLFNLARLRDDQGRGEEALALYRRACLADPAASDAAYNLGNLLARRGALAQAAEVLG 180

Query: 63  KAYQLAPDHVPCITNLAVNAFNLGKTEMALQLTLRQVELEPGNALAYDNLGQIFRQLGQY 122
           KA  + P      TNL +    LG    AL    R V L+P  A A  NL  +   L  Y
Sbjct: 181 KAASVTPHDARIQTNLGIVLRRLGDAAGALACQRRAVALDPDLADAQWNLANLLLALDDY 240

Query: 123 E 123
           +
Sbjct: 241 D 241