Pairwise Alignments

Query, 939 a.a., excinuclease ABC, A subunit from Dechlorosoma suillum PS

Subject, 944 a.a., Excinuclease ABC subunit A from Pseudomonas fluorescens FW300-N2E2

 Score = 1392 bits (3602), Expect = 0.0
 Identities = 693/942 (73%), Positives = 804/942 (85%), Gaps = 4/942 (0%)

Query: 1   MDEIKIRGARTHNLKNISLDLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           +D+I IRGARTHNLKNI L LPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   LDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYC 120
           ARQFL +MEKPDVD IEGLSPAISIEQK+TSHNPRSTVGT+TEI+DYLRLLYAR G P C
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRC 120

Query: 121 PEHGEPLEAQTVSQMVDHVLALPEETKLMILAPVVANRKGEQLDLFTELRAQGFVRLRVD 180
           P+H  PLEAQTVSQMVD VLA PE +KLM+LAPVV  RKGE L +F ELRAQGFVR RV+
Sbjct: 121 PDHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVVRERKGEHLMVFEELRAQGFVRARVN 180

Query: 181 GTIYEIDNLPKLAKSQKHNIDVVVDRLKVREDMRQRLAESFETALRHADGRAIALEM--E 238
           G + E+D LPKL K +KH+IDVVVDR KVR D++QRLAESFETAL+ ADG A+   M  E
Sbjct: 181 GKLCELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE 240

Query: 239 SNQEHLFSAKFACPICSYALQELEPRLFSFNNPMGACPKCDGLGVIQFFDPKRVVAHPDL 298
             +E +FSA+FACPIC +A+ ELEP+LFSFNNP GACP CDGLGV QFFD KR+V + +L
Sbjct: 241 PGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLV-NGEL 299

Query: 299 SLAAGAIRGWDKRNQFYFQMIGSLAEYYGFSVDTPFSELTDEVKQVLLYGSDKDLVPFQY 358
           +LA GAIRGWD+RN +YFQM+GSLA +Y FS+D PF+EL  + ++ +L GS    V F+Y
Sbjct: 300 TLAEGAIRGWDRRNVYYFQMLGSLAAHYKFSLDKPFNELPADQQKFILQGSGSQNVDFKY 359

Query: 359 MNERGKLVLKEHAFEGIIPNLERRYKETDSLAVREELAKYISNTTCPTCEGTRLRQEARH 418
           +N+RG +V + H FEGI+PNLERRY+ET+S +VREELAK++S   CP C GTRLR+EARH
Sbjct: 360 LNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREARH 419

Query: 419 VKVGSKTLHEISHLPLAEARDYFETIQLTGHKAQVAEKILKEITSRLQFLINVGLDYLSL 478
           V VG KTL  ++ LP+ +A DYF  ++LTG + ++A+KILKEI  RLQFL+NVGLDYL+L
Sbjct: 420 VWVGEKTLPAVTSLPIGDATDYFGGLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLTL 479

Query: 479 DRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLQTLRQLRDIGNT 538
           DRSA+TLSGGEAQRIRLASQIG+GL GVMY+LDEPSIGLHQRDNDRLL TL+ LRDIGNT
Sbjct: 480 DRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLGTLKHLRDIGNT 539

Query: 539 VIVVEHDEDAIRTADYVVDIGPGAGVHGGAIVAEGTPQQVTDNPASMTGDYLSGRKKIEV 598
           VIVVEHDEDAIR ADYVVDIGPGAGVHGG IVA+GT  +V  +P S+TG YLSGR KI+V
Sbjct: 540 VIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAQGTAAEVMAHPDSLTGKYLSGRVKIKV 599

Query: 599 PKKRRQADPEKKLQVIGAKGNNLKDVSLELPVGLMTCITGVSGSGKSTLINDTLYTAAAK 658
           P KR   + +  L + GA+GNNL++V LE+P+GL+TC+TGVSGSGKSTLIN+TL+  +A 
Sbjct: 600 PAKRTPRNKKLSLTLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSAT 659

Query: 659 HLYGSTA-EPAEHEEIIGLDHFDKVINVDQSPIGRTPRSNPATYTGLLTPIRELFAGVPE 717
            L G+T  E A H+ I GL+H DKV+++DQSPIGRTPRSNPATYTGL TPIRELFAGVPE
Sbjct: 660 ALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPE 719

Query: 718 ARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCHGKRYNRETLEVHY 777
           +RSRGYGPGRFSFNVKGGRCEACQGDG+IKVEMHFLPDIYVPCDVC  KRYNRETLE+ Y
Sbjct: 720 SRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKY 779

Query: 778 KGKSIYDVLQMTVEQAREFFDPVPVVARKLQTLVDVGLSYITLGQSATTLSGGEAQRVKL 837
           KGK+I++ L+MT+E+AR FFD VP +ARKLQTL+DVGLSYI LGQSATTLSGGEAQRVKL
Sbjct: 780 KGKNIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKL 839

Query: 838 ALELSKRDTGRTLYILDEPTTGLHFADIEMLLKVLHRLADHGNTVVVIEHNLDVIKTADW 897
           + ELSKRDTG+TLYILDEPTTGLHFADI+ LL VLHRL DHGNTVVVIEHNLDVIKTADW
Sbjct: 840 SRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADW 899

Query: 898 LVDLGPEGGGGGGRIIAAGAPEAVVKVGESHTGRFLKPLLSR 939
           LVDLGPEGG  GG+IIA G PE V ++ +S+TG +LKPLL R
Sbjct: 900 LVDLGPEGGSKGGQIIAVGTPEQVAEMKQSYTGYYLKPLLER 941