Pairwise Alignments

Query, 939 a.a., excinuclease ABC, A subunit from Dechlorosoma suillum PS

Subject, 950 a.a., excinuclease ABC, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1343 bits (3477), Expect = 0.0
 Identities = 651/942 (69%), Positives = 788/942 (83%), Gaps = 3/942 (0%)

Query: 1   MDEIKIRGARTHNLKNISLDLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MD+I+IRGARTHNLKNI+L +PRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYC 120
           ARQFL LMEKPDVD IEGLSPAISIEQK+TSHNPRSTVGT+TEI+DYLRLL+AR G P C
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC 120

Query: 121 PEHGEPLEAQTVSQMVDHVLALPEETKLMILAPVVANRKGEQLDLFTELRAQGFVRLRVD 180
           P HG+PL AQTVSQMVD VL +PE+++LM+LAPVV  RKGE + L   L AQG++R R+D
Sbjct: 121 PTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARID 180

Query: 181 GTIYEIDNLPKLAKSQKHNIDVVVDRLKVREDMRQRLAESFETALRHADGRAIALEME-- 238
           G + ++ + P L    KH I+VVVDR KVR D++QRLAESFETAL  + G A+   M+  
Sbjct: 181 GEVCDLTDPPTLDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG 240

Query: 239 SNQEHLFSAKFACPICSYALQELEPRLFSFNNPMGACPKCDGLGVIQFFDPKRVVAHPDL 298
           + +E +FSA FACP C Y++ ELEPR+FSFNNP GACP CDGLGV QFFDP RV+ +P+L
Sbjct: 241 TTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPEL 300

Query: 299 SLAAGAIRGWDKRNQFYFQMIGSLAEYYGFSVDTPFSELTDEVKQVLLYGSDKDLVPFQY 358
           SLA GAIRGWD+RN +YFQM+ SLA++Y F V+ PF +L+D+V++++LYGS KD + F+Y
Sbjct: 301 SLAGGAIRGWDRRNFYYFQMLSSLADHYKFDVEAPFEQLSDKVRKIVLYGSGKDSIAFKY 360

Query: 359 MNERGKLVLKEHAFEGIIPNLERRYKETDSLAVREELAKYISNTTCPTCEGTRLRQEARH 418
           +N+RG +V++ H FEGI+ N++RRY+ET+S AVR+ELAK+I+   C +C G+RLR+EARH
Sbjct: 361 INDRGDVVVRNHPFEGILNNMDRRYRETESNAVRDELAKFINTQACQSCGGSRLREEARH 420

Query: 419 VKVGSKTLHEISHLPLAEARDYFETIQLTGHKAQVAEKILKEITSRLQFLINVGLDYLSL 478
           V +G   L +++   + EA DYF+ ++ TG KAQ+AEKILKE+  RL FL+NVGL+YLSL
Sbjct: 421 VFIGDLNLPKLTVWSIGEALDYFDKLEFTGQKAQIAEKILKEVRDRLGFLVNVGLNYLSL 480

Query: 479 DRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLQTLRQLRDIGNT 538
            RSAETLSGGEAQRIRLASQIG+GL GVMYVLDEPSIGLHQRDN+RLLQTL  LRD+GNT
Sbjct: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNT 540

Query: 539 VIVVEHDEDAIRTADYVVDIGPGAGVHGGAIVAEGTPQQVTDNPASMTGDYLSGRKKIEV 598
           VIVVEHDEDAIR AD+++DIGPGAGVHGG ++ +G  +++     S+TG Y+SG++ I +
Sbjct: 541 VIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGPIEKIIACDESVTGQYISGKRNIHI 600

Query: 599 PKKRRQADPEKKLQVIGAKGNNLKDVSLELPVGLMTCITGVSGSGKSTLINDTLYTAAAK 658
              R   DP++ +++ GA+GNNL++V L +P+GL TC+TGVSGSGKSTLINDT +  A K
Sbjct: 601 STPRTPFDPKQVIELYGARGNNLRNVDLTIPIGLFTCVTGVSGSGKSTLINDTFFKIAHK 660

Query: 659 HLYGSTA-EPAEHEEIIGLDHFDKVINVDQSPIGRTPRSNPATYTGLLTPIRELFAGVPE 717
            L G+T  EPA ++ I+G++  DKV+++DQSPIGRTPRSNPATYTG+ TPIRE+FAG  E
Sbjct: 661 MLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAGTQE 720

Query: 718 ARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCHGKRYNRETLEVHY 777
           +R+RGY  GRFSFNVKGGRCEACQGDG+IKVEMHFLPD+YVPCD C GKRYNRETLEV Y
Sbjct: 721 SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRY 780

Query: 778 KGKSIYDVLQMTVEQAREFFDPVPVVARKLQTLVDVGLSYITLGQSATTLSGGEAQRVKL 837
           KGK+I++VLQMTVE AREFFD VP +ARKLQTL+DVGLSY+ LGQSATTLSGGEAQRVKL
Sbjct: 781 KGKNIHEVLQMTVEDAREFFDAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKL 840

Query: 838 ALELSKRDTGRTLYILDEPTTGLHFADIEMLLKVLHRLADHGNTVVVIEHNLDVIKTADW 897
           A ELSKRDTG+TLYILDEPTTGLHFADI++LL VLHRL  HGNT+VVIEHNLDVIKTADW
Sbjct: 841 AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADW 900

Query: 898 LVDLGPEGGGGGGRIIAAGAPEAVVKVGESHTGRFLKPLLSR 939
           ++DLGPEGGGGGG I+A G PE V     SHT RFLKPLL R
Sbjct: 901 IIDLGPEGGGGGGTILATGTPEDVALHPTSHTARFLKPLLER 942