Pairwise Alignments

Query, 1320 a.a., ATP-dependent helicase HrpA from Dechlorosoma suillum PS

Subject, 1303 a.a., ATP-dependent RNA helicase HrpA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N1B4

 Score = 1095 bits (2832), Expect = 0.0
 Identities = 601/1294 (46%), Positives = 830/1294 (64%), Gaps = 49/1294 (3%)

Query: 51   EKAKADYEALLA----RSRAACAEWAGR---LPKPEYAEDLPVNGRREEIKALIEHNQVV 103
            E  K   EA LA    R++A+C +   R   LP   Y + LP+  +R+EIKA +  +QV+
Sbjct: 32   ELRKKPDEAKLAQWVTRTQASCDQVLARRASLPVIRYDDSLPIAAKRDEIKAALLKHQVL 91

Query: 104  IVCGETGSGKTTQLPKICLELGRGAAGLIGHTQPRRLAARSVAARVAQELQTQIGAGVGV 163
            I+ GETGSGKTTQLPKICLE+GRG  GLIGHTQPRR+AARSVA+RVA+EL T +GA VG 
Sbjct: 92   IIAGETGSGKTTQLPKICLEIGRGQHGLIGHTQPRRIAARSVASRVAEELATPLGALVGY 151

Query: 164  KIRFQDRSGPQSYLKLMTDGILLAETQTDPYLNAYDTIIIDEAHERSLNIDFLLGYLKQL 223
            ++RF+D+S   + +KLMTDGILLAETQ D YL  YDTII+DEAHERSLNIDFLLGYLK L
Sbjct: 152  QVRFEDQSDANTLIKLMTDGILLAETQNDRYLERYDTIIVDEAHERSLNIDFLLGYLKTL 211

Query: 224  LAKRKDLKVIITSATIDAERFAQHFAQHGKPAPVIEVSGRLYPVEVRYRPVTPLEEDQEE 283
            L +R DLKVIITSATID ERF++HF      AP++EVSGR +PVE  YRP+T LE+D+E 
Sbjct: 212  LPRRPDLKVIITSATIDLERFSKHFDD----APIVEVSGRTFPVETWYRPLT-LEQDEEG 266

Query: 284  RDLYD------AIVDAVHELG------REGPGDVLVFLPGEREIREAAEALRKHHFPGPQ 331
              + D      AI+  + E+       R+ PGDVLVFLPGEREIR+AA+ LRK       
Sbjct: 267  NRVEDDLTVDQAILATLDEIAAFERSERKSPGDVLVFLPGEREIRDAADMLRKAQLK--H 324

Query: 332  PEILPLFSRLSAAEQDRVFKTGGGRRVVLATNVAETSLTVPGIRYVVDTGLARVKRYSYR 391
             EILPL++RLS AEQ R+F++  GRRVVLATNVAETSLTVPGIRYV+D+G AR+ RYSYR
Sbjct: 325  TEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAETSLTVPGIRYVIDSGTARISRYSYR 384

Query: 392  NKVEMLQVERVSQAAARQRAGRCGRVAAGVCIRLYDEADFNARGEFTDPEILRSSLAGVI 451
             KV+ L +E +SQA+A QR GRCGRV  G+CIRLY E DF  R EFTDPEILR++LA VI
Sbjct: 385  AKVQRLPIEAISQASANQRKGRCGRVEPGICIRLYSEEDFIGRPEFTDPEILRTNLAAVI 444

Query: 452  LRMKALKLTDVESFPFIEAPPPKAINDGYSLLQELGGLDEDNRLTDVGRGLAKLPLDPRI 511
            L+M  L+L ++  FPFIE P  KAI+DG++LLQEL  +D +++LT +GR LA+LP+DPR+
Sbjct: 445  LQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELSAVDRNSQLTPLGRQLARLPVDPRM 504

Query: 512  ARMIVAARDRGCLKEVLVIAAALSVQDPRERPQERLQAADEKHRQFADEKSEFLSWLKLW 571
             RM++ A   G L+EVL++A+A+S+QDPRERP ER QAAD+ H Q+ D  S+F   + LW
Sbjct: 505  GRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQQAADQAHAQWKDVDSDFAGLVNLW 564

Query: 572  NWFEEQARHLSGRKLAEACKERFLSYLRMREWREVYNQIHAMVTELGWRENEIPATYEPI 631
              FEEQ + L+   L   C++ FL+YLR+REWR+ + Q+  +  ++    N+ PA Y  +
Sbjct: 565  RGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSHRQLSLICRDMQLSLNKEPADYPKL 624

Query: 632  HKALLTGLLGNIGCKSDDSSHYLGARGIRFLIHPGSPLQKKAGKWVVCAELTETTKLYAR 691
            HKA+L+GLL  IG K+D+   YLGAR  RF IHP S L KK  +W++ AEL ETTKLYAR
Sbjct: 625  HKAVLSGLLSQIGQKADEGD-YLGARQRRFWIHPSSGLGKKRPQWLMTAELVETTKLYAR 683

Query: 692  CLARIEPEWLEEVGAHLIRKSYFDPHWEKKAMQAVAYERSTLHGIVVNPKKRVNFGPMNP 751
             +A+I+ +W+E +  HLI+K++F+PHWEKK  Q VA+E+ TL G++V  ++ V++GP++P
Sbjct: 684  MVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAFEQITLFGLIVVGRRPVHYGPIDP 743

Query: 752  EEARLLFIRQGLVGGEINEDFVRRWPFYQHNQKAIRDIENLEHKQRRQDVLVDDELIFAF 811
              +R  FIR+GLV GEI      +      N + +  ++ LE K RR+D+L D+E +FAF
Sbjct: 744  VVSREFFIREGLVRGEIQS----KAKCLSANAQLLEQLDELEAKARRRDILADEETLFAF 799

Query: 812  YDHLIPSGIYNGADFDKWRKEAERENQKLLFLQKEDLMRHEAAGVTTDAFPPQMRLSGVD 871
            YD  +P+ I+  A FD W +   +++ +LL +++ED++  EA+ VT   +P  + +  ++
Sbjct: 800  YDARLPAEIHQTATFDSWYRVNSQKDPQLLIMREEDVLAREASEVTAAHYPDTLHIGDLE 859

Query: 872  YALTYHFEPGSPRDGVTLVLPLAQLNQVPANRSEWLVPGLLKEKVVQLVKTLPQRIRAKL 931
             AL+YHFEP  PRDGVTL +P   L  +P  R EWLVPG+++ K + LV+ LP+ +R   
Sbjct: 860  LALSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGVIEAKCIALVRNLPKALRKNF 919

Query: 932  VPVPEFAEEFIAWVGNDEKRMAPGIIAPLIDFIFESRGLNARGWAVTPDAFRPG--ELPA 989
            VPVP+F +  +  +   E  +   +   L         L   G  V+ +A+     ++ +
Sbjct: 920  VPVPDFVKAALQRITFAEGSLPLALGREL---------LRMTGARVSDEAWAEASQQVDS 970

Query: 990  HFSMNFKLVDEHGRQLDMSRSLAQLRGEWGREARQEFQELHETPSEFTGLTDWTFGKLPE 1049
            H  MN ++VD  G+ L   R LA+L   +  EA Q    + +T      +    F  + E
Sbjct: 971  HLRMNLEIVDGQGKFLGEGRDLAELTARFA-EASQAALAVPQTAKSQQPVEPKVFAAVAE 1029

Query: 1050 LMEVAVGGQMVIGYPGLTEDGETVSLRVYDSQEEALAAHRLGLSRLFQLQLKEQVKYFEK 1109
              +  + G  +  YP L E+G TV    + +  EA   HR  L RL   QL E  K+   
Sbjct: 1030 KTQQKIAGLSMTVYPALVEEGGTVKEGRFSTPAEAEFQHRRALQRLLMQQLAEPAKFLRG 1089

Query: 1110 NLPGLTQMAMQFMSLGSSDDLRQQLVSVIFERACLVE---PWPEDAESFKARCAEGKNRL 1166
             LPGLT++ + +  +G  D L + ++    + +C++E   P P D     +     +   
Sbjct: 1090 KLPGLTELGLMYRDMGRVDSLVEDILLASLD-SCILEGEDPLPRDGAGLASLAERKRGGW 1148

Query: 1167 GLLAQEICRLVGLVLTEWQALVKKLPAFKPFPGAV--QDIEKQIGRLIHKRFVLETPFER 1224
               A+ + +L   +L  W  L K+         AV   DI++Q+  L++  FV ETP   
Sbjct: 1149 TEHAERLAKLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGFVRETPMPW 1208

Query: 1225 LQHFPRYLKAAAMRLDKLKANPARDVQLLADYSTLWTQYERRALQLAKQGVSDPQLEQFR 1284
            L+  PRYLKA   R +KL A   +D     + S LW QY+ RA + A++G  DPQLE +R
Sbjct: 1209 LKELPRYLKAVEQRFEKLGAQVQKDRVWSGELSGLWAQYQTRANKHAQEGKRDPQLELYR 1268

Query: 1285 WLLEELRVNLFAQELKTPVPVSVKRLQKLWEGIQ 1318
            W LEE RV+LFAQ+L T VP+S KRL K W  ++
Sbjct: 1269 WWLEEYRVSLFAQQLGTKVPISDKRLNKQWSQVE 1302