Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 617 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score =  694 bits (1790), Expect = 0.0
 Identities = 373/623 (59%), Positives = 462/623 (74%), Gaps = 27/623 (4%)

Query: 44  RKTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAED 103
           +++RLK LI+ G+E+G+LTYAE+NDHLP+D+ D EQ+E II   NDMGI VF+ AP A+ 
Sbjct: 7   QQSRLKELIQRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEVAPDADA 66

Query: 104 LLMSDNAPAVAD-DEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI 162
           LL+++     AD DE   EEA AAL+ V+++ GRTTDPVRMYMREMGTVELLTREGEIEI
Sbjct: 67  LLLAE-----ADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEI 121

Query: 163 AKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPN----AAEEEL 218
           AKRIE+G++ ++ AI+  P T+  ILA  E+V  E  R+ +++ G IDP+    AA +E+
Sbjct: 122 AKRIEEGIREVMSAIAHFPGTVDSILADYERVTTEGGRLSDILSGYIDPDDDGAAAPQEV 181

Query: 219 -------AAEEAVVEGDDE-VEDGDDEEEGGEGAAVSASLLQLKTDALERFATIKTLYGK 270
                  AA+ A  + DDE  ED D EEE G+G      + +L      RF  +     K
Sbjct: 182 EPEAPQTAAKPAADDKDDEDEEDSDTEEEEGDGGP-DPEVARL------RFGAVAEQLEK 234

Query: 271 AHKALVSKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQEL 330
           A+KAL   G   +  ++  + ++   M I+   K  + L + VR+ ++ +R +ER I +L
Sbjct: 235 ANKALKKHGRASQQAVEELEALAILFMPIKLVPKQYDALVERVRNALNQIRAQERAIMQL 294

Query: 331 CVRKVGMPRPHFIKSFPGNEINLEWVEKEIAVAKG-YGPILTRTAPNIQEEQRKLLALQD 389
           CVR   MPR  F++ FP NE NL+W E ++A  KG Y   +     +IQ  Q+ L+ L+ 
Sbjct: 295 CVRDARMPRADFLRQFPSNETNLDWAE-QLASGKGKYAEAIGNRKEDIQRCQQMLIELEQ 353

Query: 390 HIGIPLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGN 449
              + + D+KDIN++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGN
Sbjct: 354 ECSLAIADIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN 413

Query: 450 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQ 509
           IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ
Sbjct: 414 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ 473

Query: 510 ILQETGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATT 569
           +LQE G EP P  L  +MEMPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIED+A  
Sbjct: 474 MLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSAMQ 533

Query: 570 APVDAALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQ 629
           +P+D A    L+E T+E+L  LT REAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQ
Sbjct: 534 SPIDVATVESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ 593

Query: 630 IEAKALRKLRHPSRSDKLRSFLD 652
           IEAKALRKLRHP+RS+ LRSFLD
Sbjct: 594 IEAKALRKLRHPTRSEHLRSFLD 616