Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score =  673 bits (1736), Expect = 0.0
 Identities = 362/622 (58%), Positives = 450/622 (72%), Gaps = 17/622 (2%)

Query: 45  KTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAEDL 104
           +++LK L+  GKE+G+LTYAE+NDHLP ++VD+EQ+E II   NDMGI+V + AP A+DL
Sbjct: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL 65

Query: 105 LMSDNAPAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 164
            +SD+      DE+  E A AALS+V+SE GRTTDPVRMYMREMGTVELLTREGEI+IAK
Sbjct: 66  ALSDDTTIT--DEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 123

Query: 165 RIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPNAAE--------- 215
           RIEDG+  +  AI+  P TI  IL   ++V+ EE+R+ ++I G +DPN  E         
Sbjct: 124 RIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHI 183

Query: 216 -EELAAEEAVVEGDDEVEDGD-DEEEGGEGAAVSASLLQLKTD---ALERFATIKTLYGK 270
             EL+  +   E D  VED D DE+E G+G + S S  ++  D   A E+F  ++  +  
Sbjct: 184 GSELSEADLADEDDAVVEDEDEDEDEDGDGES-SDSEEEVGIDPELAREKFNELRGKFQN 242

Query: 271 AHKALVSKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQEL 330
              A+   G       +    +       R T K  + L +++R+ +D VR +ER + + 
Sbjct: 243 LQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKA 302

Query: 331 CVRKVGMPRPHFIKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLALQDH 390
            V    MP+  FI  F GNE N EW++K +A  K Y   +      I+   +KL  ++  
Sbjct: 303 VVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQE 362

Query: 391 IGIPLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 450
             + ++ +KDI+++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNI
Sbjct: 363 TSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 422

Query: 451 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 510
           GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+
Sbjct: 423 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 482

Query: 511 LQETGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTA 570
           LQE G EP P  LA +M+MPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIEDT    
Sbjct: 483 LQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLEL 542

Query: 571 PVDAALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQI 630
           P+D+A  + L+  T+++L  LTPREAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQI
Sbjct: 543 PLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI 602

Query: 631 EAKALRKLRHPSRSDKLRSFLD 652
           EAKALRKLRHPSRS+ LRSFLD
Sbjct: 603 EAKALRKLRHPSRSEVLRSFLD 624