Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 616 a.a., RNA polymerase, sigma 70 subunit, RpoD from Pseudomonas syringae pv. syringae B728a

 Score =  682 bits (1759), Expect = 0.0
 Identities = 365/617 (59%), Positives = 450/617 (72%), Gaps = 16/617 (2%)

Query: 44  RKTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAED 103
           +++R+K LI LG+E+ +LTYAE+NDHLP+D+ D EQ+E II   NDMGI V + AP A+ 
Sbjct: 7   QQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHESAPDADA 66

Query: 104 LLMSDNAPAVAD-DEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI 162
           L+++D     AD DE   EEA AAL+ V+++ GRTTDPVRMYMREMGTVELLTREGEIEI
Sbjct: 67  LMLAD-----ADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEI 121

Query: 163 AKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPNAAEEELAAEE 222
           AKRIE+G++ ++ AI+  P T+  IL+   +V  E  R+ +V+ G IDP+      A   
Sbjct: 122 AKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTSEGGRLSDVLSGYIDPDDGIAPPAEVP 181

Query: 223 AVVEGDD-EVEDGDDEEEGGEGAAVSASLLQLKTD---ALERFATIKTLYGKAHKALVSK 278
             V+    + E  DD+EE    A+     ++   D   A +RF  +        KAL   
Sbjct: 182 PPVDPKAVKAEGADDDEEESADASDEEDEVESGPDPVIAQQRFGAVSDQMEITRKALKKF 241

Query: 279 GSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRKVGMP 338
           G  DK  +     ++   M I+   K  E L + VR  ++ +R +ER I +LCVR   MP
Sbjct: 242 GRDDKHAIAEMVALAELFMPIKLVPKQFEGLVERVRGALERLRAQERAIMQLCVRDARMP 301

Query: 339 RPHFIKSFPGNEINLEWVEKEIAVAKG---YGPILTRTAPNIQEEQRKLLALQDHIGIPL 395
           R  F++ FPGNE++  W +   A+AKG   Y   + R  P+IQ  Q+KL AL++  G+ +
Sbjct: 302 RADFLRQFPGNEVDESWTD---ALAKGKSKYAEAIGRLQPDIQRCQQKLSALEEETGLKI 358

Query: 396 KDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 455
            ++KDIN++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
Sbjct: 359 AEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 418

Query: 456 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETG 515
           VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQE G
Sbjct: 419 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 478

Query: 516 AEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDAA 575
            EP P  L  +MEMPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIED+   +P+D A
Sbjct: 479 REPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVA 538

Query: 576 LYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKAL 635
               L+E T+E+L  LT REAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQIEAKAL
Sbjct: 539 TVESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 598

Query: 636 RKLRHPSRSDKLRSFLD 652
           RKLRHP+RS+ LRSFLD
Sbjct: 599 RKLRHPTRSEHLRSFLD 615