Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Sinorhizobium meliloti 1021

 Score =  523 bits (1347), Expect = e-152
 Identities = 312/687 (45%), Positives = 416/687 (60%), Gaps = 53/687 (7%)

Query: 16  AKSSKAKEKALLESAGATQAATPVDVETRKTRLKTLIKLGKERGFLTYAEINDHLPDDVV 75
           A   K  E+A +E  GA        ++     +K +IK  K+RG++T  E+N  LP + V
Sbjct: 2   ATKVKENEEADVEREGAPDGPL---LDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEV 58

Query: 76  DAEQIESIITTFNDMGIQVFDEAPAAEDLLMSDNAPAVADDEEVEEEAEA-----ALSTV 130
            +EQIE  ++  +DMGI V ++  A E     D+  A   + E  E A A     A S  
Sbjct: 59  TSEQIEDTMSMLSDMGINVIEDEEAEEAAASDDDDGADEGESEGGELAPASGTALAASKK 118

Query: 131 DSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMIQAISACPTTIAEILAM 190
                RT DPVRMY+REMG+VELL+REGEI IAKRIE G + MI  +   P T   ++  
Sbjct: 119 KEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIW 178

Query: 191 AEKVEKEEMRIDEVID---GLIDPNA-------AEEELAAEEAVVEGDDEVE-------D 233
            +++ + +  + E+ID       P A       + E++ A+    E  ++V        D
Sbjct: 179 RDELNEGQTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKVRRTRTAAND 238

Query: 234 GDDEEEGGEGAA--------------VSASLLQLKTDALERFATIKTLYGKAHKA----- 274
            D    GGEG A              ++A   +L+   +E    I   Y K  K      
Sbjct: 239 DDITNVGGEGQAPEEEEEDDDESNLSLAAMEAELRPQVMETLDVIAETYKKLRKLQDQQV 298

Query: 275 ---LVSKGS----QDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKI 327
              L + G+    Q++ Y +L+ ++   + ++      I+ L + +  +   + + E ++
Sbjct: 299 EARLAATGTLSPAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDISKRLTQNEGRL 358

Query: 328 QELCVRKVGMPRPHFIKSFPGNEINLEWVEKEIAVA-KGYGPILTRTAPNIQEEQRKLLA 386
             L     G+ R  F++ + G E++  W++    +A KG+          I++ ++++  
Sbjct: 359 LRLA-ESYGVKREAFLEQYSGAELDPNWMKSISNLAGKGWKEFARAENQTIRDIRQEIQN 417

Query: 387 LQDHIGIPLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQ 446
           L    GI + + + I   +  GE +AR AK+EM EANLRLVISIAKKYTNRGLQFLDLIQ
Sbjct: 418 LATETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 477

Query: 447 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRI 506
           EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+ R 
Sbjct: 478 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRT 537

Query: 507 SRQILQETGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDT 566
           SRQ+L E G EP P  LA K+ MP EK+RK+LKI+KEPIS+ETP+GD++DSHLGDFIED 
Sbjct: 538 SRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDK 597

Query: 567 ATTAPVDAALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRER 626
               P+DAA+ + LRE T  +L +LTPRE +VLRMRFGI MNTDHTLEEVG+QF VTRER
Sbjct: 598 NALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRER 657

Query: 627 IRQIEAKALRKLRHPSRSDKLRSFLDN 653
           IRQIEAKALRKL+HPSRS KLRSFLD+
Sbjct: 658 IRQIEAKALRKLKHPSRSRKLRSFLDS 684