Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 620 a.a., RNA polymerase sigma-70 factor (RefSeq) from Shewanella amazonensis SB2B

 Score =  696 bits (1796), Expect = 0.0
 Identities = 366/626 (58%), Positives = 457/626 (73%), Gaps = 27/626 (4%)

Query: 43  TRKTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAE 102
           T +++LK L+  GKE+G+LTYAE+NDHLP D+VD++QIE II   NDMGI+V++EAP A+
Sbjct: 7   TPQSQLKMLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYEEAPDAD 66

Query: 103 DLLMSDNAPAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI 162
           +++MS++      DE+  EEA AAL+TV+SE GRTTDPVRMYMREMGTVELLTREGEI I
Sbjct: 67  EMMMSEDNT----DEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVI 122

Query: 163 AKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPNA--------- 213
           AKRIE+G+  +  +++  P  I+ IL   ++ E + +R+ ++I G +DPN          
Sbjct: 123 AKRIEEGINTVQSSVAEYPQAISMILEQFDQFEADAIRLSDIISGFVDPNEEDVGPTATH 182

Query: 214 -----AEEELAAEEAVVEGDDEVEDGDD-EEEGGEGAAVSASLLQLKTDALERFATIKTL 267
                +EEEL  E+ + E ++E EDGD  +++G +G             A ERFA ++  
Sbjct: 183 IGSELSEEELEDEDDMDEDEEEDEDGDSSDDDGAKGPDPEV--------ARERFAALRAA 234

Query: 268 YGKAHKALVSKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKI 327
           Y  A K +  KG       +   ++       R   K  +RL  S+R M+D VR +ER I
Sbjct: 235 YDNALKVIEVKGRAHPESTRALFELGEIFKEFRLVPKQFDRLVKSMREMMDKVRVQERLI 294

Query: 328 QELCVRKVGMPRPHFIKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLAL 387
            +LCV +  MP+ +F+K F GNE +L W  KEI   + Y   L     ++Q  + KL A+
Sbjct: 295 MKLCVEQAKMPKKNFVKLFTGNETDLTWFNKEIEAGRPYSADLKLVDEDVQRCRAKLEAI 354

Query: 388 QDHIGIPLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQE 447
           +   G+ ++ +KDIN++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQE
Sbjct: 355 EVETGLSIESIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 414

Query: 448 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRIS 507
           GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRIS
Sbjct: 415 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 474

Query: 508 RQILQETGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTA 567
           RQ+LQE G EP P  LA +M MPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIEDT 
Sbjct: 475 RQMLQEMGREPSPEELAERMAMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 534

Query: 568 TTAPVDAALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERI 627
              P+D+A    L++ T E+L  LT REAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERI
Sbjct: 535 LELPLDSATSESLKQATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 594

Query: 628 RQIEAKALRKLRHPSRSDKLRSFLDN 653
           RQIEAKALRKLRHPSRS+ L+SFLD+
Sbjct: 595 RQIEAKALRKLRHPSRSEILKSFLDD 620