Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 969 a.a., DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  261 bits (668), Expect = 8e-74
 Identities = 188/544 (34%), Positives = 285/544 (52%), Gaps = 37/544 (6%)

Query: 110 APAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDG 169
           A +V +D +     +A L   D  + R  +P+  Y   +   ELLTRE E++   R E  
Sbjct: 452 ADSVYEDHDAASIDDAMLLLDDLLYARD-EPMGYYFASLPGKELLTREQEVDNGMRREAA 510

Query: 170 LKHMIQAISACP---TTIAEILAMAEKVEKEEMRIDEVIDGLIDPNAAEEELAAEEAVVE 226
              +++A+S  P     +A +   A +    E  + +V+  L +   +E+ +  + AV  
Sbjct: 511 RLAIMEALSEVPFICELLAHLCQEALREHNPEQSLQKVVAEL-NTLPSEDFVEIKRAVSL 569

Query: 227 GDDEVEDGDDEEEGGEGAAVSASLLQLKTDALERFATIKTLYGKAHKALVSKGSQDKTYL 286
             DE EDGD+ ++  +     A +  LK        T   + G++       G QD    
Sbjct: 570 FMDEQEDGDEPDDFVDTYPYEAIVGALK--------TFLNVSGESE----HPGVQD---- 613

Query: 287 KLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRKVGMPRPHFIKSF 346
                      +I  T   +  L  ++   +D V + + ++  L  R++ +PR    +S 
Sbjct: 614 --------TFRSIVLTEDALNILIKALYESIDKVSDIKTELVNLYTREIKLPR-KTAESV 664

Query: 347 PGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLALQDHIGIPLKDLKDINKQMS 406
              ++  E + +           L R A  I   Q ++  +    GI L  L+DI  ++ 
Sbjct: 665 AEQKMGRELISQLKTEYPLCEDKLERHAGAINRLQAQMQNINQKTGIDLYSLQDIGSKIK 724

Query: 407 TGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 466
             +     A+ EM   NLRLV+S+A KY  RGL+  DL+QEGNIGLMKAV+KF++R+G+K
Sbjct: 725 KLQRDISAARDEMITFNLRLVLSVANKYLGRGLELADLVQEGNIGLMKAVEKFDHRKGFK 784

Query: 467 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIK 526
           FSTYATWWIRQAITR+IADQAR IRIPVH+ E++NK+   S+ +  + G  P  + L++ 
Sbjct: 785 FSTYATWWIRQAITRAIADQARIIRIPVHVNESLNKLISASKVLTHKFGRGPKISELSLI 844

Query: 527 MEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDAALYSGLREVTKE 586
           + MPE K+  +    K+ + ME P+ + D  H  +   D A  +P +  +        K+
Sbjct: 845 LSMPETKVENL----KQILVME-PVAEAD--HNTNGYVDWAAMSPEEEIIDDDRDTNIKD 897

Query: 587 ILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDK 646
           +L  LT +E KVL +RFGI   T+ TLEEVG+QFDVTRERIRQIEAK+L+KL H SRS  
Sbjct: 898 LLKGLTDKEKKVLELRFGINAATELTLEEVGQQFDVTRERIRQIEAKSLKKLAHTSRSSH 957

Query: 647 LRSF 650
           L  F
Sbjct: 958 LAIF 961