Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

 Score =  553 bits (1424), Expect = e-161
 Identities = 330/680 (48%), Positives = 425/680 (62%), Gaps = 74/680 (10%)

Query: 41  VETRKTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPA 100
           +++    +K L+  GK+RG++TY E+N+ LP D V +EQIE  +   +DMGI V ++   
Sbjct: 24  LDSMNAAVKKLVNRGKDRGYITYDELNNALPPDDVSSEQIEDTMAMLSDMGINVVEDEEE 83

Query: 101 AEDLLMSDNAPAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEI 160
            E    S   PA A +EE   E  A  +  + + GRT DPVRMY+REMG+VELL+REGEI
Sbjct: 84  GE---ASAAPPAEAGEEEPGREVAATGNVSEDDIGRTDDPVRMYLREMGSVELLSREGEI 140

Query: 161 EIAKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVID-------------- 206
            IAKRIE G + MI  I   P TI  +L   + +    M + ++ID              
Sbjct: 141 AIAKRIEAGREMMIGGICESPLTIRALLQWHDALVDGRMLLRDIIDLDATYGSGAGPDVV 200

Query: 207 --GLID----------------PNAAEEELAAEEAVVEG-DDEVED-------------G 234
             GL D                P  A+E   AEEAV  G DD+ ED             G
Sbjct: 201 AEGLEDSVVPLSPLALSPARALPKEADE---AEEAVTPGRDDDSEDEDEGDDAKPADGAG 257

Query: 235 DDE-----EEGGEGAAVSASLLQLKTD----ALERFATIKTLYGKAHKA------LVSKG 279
           D+E     E+ G+G+  + SL  ++ +     LE F  I T YGK  KA       + KG
Sbjct: 258 DEEAAPSGEDEGDGSENNVSLAAMEQELMPRVLETFEHIATTYGKLKKAQDQRIAALQKG 317

Query: 280 SQ-----DKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRK 334
            +     ++ Y KL+ ++   + ++   +  IE+L + + ++   +  +E K+  L  R 
Sbjct: 318 EEPGAALERKYDKLKLELVGLMEDVHLNNARIEQLVEQLNALNKGLITQEGKLLRLAER- 376

Query: 335 VGMPRPHFIKSFPGNEINLEWVEKEIAV-AKGYGPILTRTAPNIQEEQRKLLALQDHIGI 393
             + R  F+  + G E++  W E   A+  KG+    TR A  I++ +  +  + +   +
Sbjct: 377 AKIRRDEFLDHYFGREMDPSWREDVAALPGKGWRDFTTRFADEIKDIRGSIAEIAERSLL 436

Query: 394 PLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 453
           P+ + + I   +  GE +A RAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
Sbjct: 437 PIPEFRRIVSTVQKGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 496

Query: 454 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQE 513
           KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+ R SRQ+L E
Sbjct: 497 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHE 556

Query: 514 TGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVD 573
            G EP P  LA K++MP EK+RK+LKI+KEPIS+ETPIGD++DSHLGDFIED     P+D
Sbjct: 557 IGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLD 616

Query: 574 AALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAK 633
           AA+ S LRE    +L +LTPRE +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAK
Sbjct: 617 AAINSNLRETCTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAK 676

Query: 634 ALRKLRHPSRSDKLRSFLDN 653
           ALRKL+HPSRS KLRSFLDN
Sbjct: 677 ALRKLKHPSRSRKLRSFLDN 696