Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 662 a.a., RNA polymerase sigma factor RpoD from Phaeobacter inhibens DSM 17395

 Score =  519 bits (1336), Expect = e-151
 Identities = 295/649 (45%), Positives = 408/649 (62%), Gaps = 40/649 (6%)

Query: 39  VDVETRKTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEA 98
           + ++  +T++K +I   +E+G++TY ++N  LP D V +EQIE +++  ++MGI + ++ 
Sbjct: 18  ISLDMSQTQVKKMIAEAREKGYITYDQLNQVLPPDQVSSEQIEDVMSMLSEMGINIIEDE 77

Query: 99  PAAEDLLMSDNAPAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREG 158
            A E+           +       A AA   +D    RT DPVRMY+REMG+VELL+REG
Sbjct: 78  EAEEEEQKGSTELVTTESNREVAVAGAAAEKLD----RTDDPVRMYLREMGSVELLSREG 133

Query: 159 EIEIAKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVID------------ 206
           EI IAKRIE G   MI  +   P T   I    +++  E++ + +VID            
Sbjct: 134 EIAIAKRIEAGRNTMIAGLCESPLTFQAITIWHDELLSEDILLRDVIDLEATFGNQLDED 193

Query: 207 -----GLIDPNA-AEEELAAEEAVVE----GDDEVEDGDDEEEGGEGAAVSASLLQLKTD 256
                 ++D +A A  + AA+E   E    G+   +D DD+E+     +++A    LK  
Sbjct: 194 GEVSEPVVDTSAVAANKPAAKETGPELDADGNPIAQDDDDDEDDQANMSLAAMEAALKDK 253

Query: 257 ALERFATIKTLYGKAHKALVSKGS------------QDKTYLKLQQQISAELMNIRFTSK 304
            L     I + Y +  +   S+ S             ++ Y  L+ +I   +  +   + 
Sbjct: 254 VLTTLEQISSDYAQLSEMQDSRISATLNEDGSFSARDEQVYQSLRAEIVLLVNELHLHNN 313

Query: 305 VIERLCDSVRSMVDSVRERERKIQELCVRKVGMPRPHFIKSFPGNEINLEWV-EKEIAVA 363
            IE L D +  +   V   +  + +L   +  + R  F++++ G E++  W+ +      
Sbjct: 314 RIEALIDQLYGINRRVMSIDSSMVKLA-DQARINRREFVEAYRGRELDPNWLSDMGDKPG 372

Query: 364 KGYGPILTRTAPNIQEEQRKLLALQDHIGIPLKDLKDINKQMSTGEAKARRAKREMTEAN 423
           +G+   + R+   I+E +  +  +  ++G+ + + + I +Q+  GE +AR+AK+EM EAN
Sbjct: 373 RGWQMFVERSTDKIEELRADMAQVGQYVGLDISEFRRIVQQVQKGEKEARQAKKEMVEAN 432

Query: 424 LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 483
           LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI
Sbjct: 433 LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 492

Query: 484 ADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEEKIRKILKISKE 543
           ADQARTIRIPVHMIETINK+ R  RQ+L E G EP P  LA K++MP EK+RK++KI+KE
Sbjct: 493 ADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKE 552

Query: 544 PISMETPIGDDDDSHLGDFIEDTATTAPVDAALYSGLREVTKEILDTLTPREAKVLRMRF 603
           PIS+ETPIGD++DS LGDFIED     P+D+A+   L+E T  +L +LTPRE +VLRMRF
Sbjct: 553 PISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREERVLRMRF 612

Query: 604 GIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLRSFLD 652
           GI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS KLRSFLD
Sbjct: 613 GIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 661