Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 323 a.a., RNA polymerase sigma factor SigB from Mycobacterium tuberculosis H37Rv

 Score =  254 bits (650), Expect = 3e-72
 Identities = 121/252 (48%), Positives = 182/252 (72%), Gaps = 4/252 (1%)

Query: 399 KDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 458
           +D+   +  GEA    A+R + EANLRLV+S+AK+YT RG+  LDLIQEGN+GL++A++K
Sbjct: 74  RDLAAVVRDGEA----ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEK 129

Query: 459 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEP 518
           F+Y +G+KFSTYATWWIRQAITR +ADQ+RTIR+PVH++E +NK+ RI R++ Q  G E 
Sbjct: 130 FDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREA 189

Query: 519 DPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDAALYS 578
               LA +  +P +KI  +L+ S++P+S++ P+G ++++ LGDFIED    +  +A +  
Sbjct: 190 TDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAE 249

Query: 579 GLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 638
            L    + +L TL  RE +V+R+RFG++     TL+++GK F ++RER+RQIE   + KL
Sbjct: 250 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 309

Query: 639 RHPSRSDKLRSF 650
           RH  R+D+LRS+
Sbjct: 310 RHGERADRLRSY 321



 Score = 39.7 bits (91), Expect = 2e-07
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 125 AALSTVDSEFGRTT---DPVRMYMREMGTVELLTREGEIEIAKRIEDGL--KHMIQ 175
           A  S VDS+    +   D VR+Y+  +G   LL   GE+E+AKRIE GL  +H+++
Sbjct: 8   ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLE 63