Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 528 a.a., RNA polymerase sigma factor SigA (sigma-A) from Mycobacterium tuberculosis H37Rv

 Score =  297 bits (760), Expect = 9e-85
 Identities = 142/239 (59%), Positives = 189/239 (79%)

Query: 414 RAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 473
           RAK  + EANLRLV+S+AK+YT RG+ FLDLIQEGN+GL++AV+KF+Y +GYKFSTYATW
Sbjct: 290 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 349

Query: 474 WIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEEK 533
           WIRQAITR++ADQARTIRIPVHM+E INK+ RI R++LQ+ G EP P  LA +M++  EK
Sbjct: 350 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 409

Query: 534 IRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDAALYSGLREVTKEILDTLTP 593
           + +I + ++EPIS++  IGD+ DS LGDFIED+     VDA  ++ L++  + +LDTL+ 
Sbjct: 410 VLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSE 469

Query: 594 REAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLRSFLD 652
           REA V+R+RFG+      TL+E+G+ + VTRERIRQIE+K + KLRHPSRS  LR +LD
Sbjct: 470 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528



 Score = 46.6 bits (109), Expect = 3e-09
 Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 18/180 (10%)

Query: 6   AKEVAKEILKAKSSKAKEKALLESAGATQAATPVDVETRKTRLKTLIKLGKERGF---LT 62
           AK  A +   A+    K +A  + A    A  P D       L     L  E G    L 
Sbjct: 81  AKSAAAKAPSARGHATKPRAP-KDAQHEAATDPEDALDSVEELDAEPDLDVEPGEDLDLD 139

Query: 63  YAEIN-DHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAEDLLMSDNAPAVADDEEV-- 119
            A++N D L DDV  A   +  + + +D   +  +   A      +D+   +A+  E   
Sbjct: 140 AADLNLDDLEDDV--APDADDDLDSGDDEDHEDLEAEAAVAPGQTADDDEEIAEPTEKDK 197

Query: 120 --------EEEAEAALST-VDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGL 170
                   E+E+EA      D+E   + D VR Y++++G V LL  E E+E+AKRIE GL
Sbjct: 198 ASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGL 257