Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 590 a.a., RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  445 bits (1144), Expect = e-129
 Identities = 259/624 (41%), Positives = 371/624 (59%), Gaps = 59/624 (9%)

Query: 47  RLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAEDLLM 106
           ++K+LI  GK  GFLT+ E+N  LP +V   EQIE II  F+ + I + D     + + +
Sbjct: 9   QIKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLEIAIVDTEKDGKKISV 68

Query: 107 SDNAPAVADDEEVEEEAEAALSTVDSE-----FGRTTDPVRMYMREMGTVELLTREGEIE 161
           S        + E E   E  L  V+ E       R+TDPVRMY+REMG V LL R+GE++
Sbjct: 69  SPG------ESEEEPSGEPGLDLVEDEESADYSSRSTDPVRMYLREMGAVPLLDRDGEVQ 122

Query: 162 IAKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPNAAEEELAAE 221
           IAK+IE G + ++ A+   P  + E++ + E +++  +++ +V+  + + + +E+E+   
Sbjct: 123 IAKKIELGEQDVLYALVEVPVAVEELINVGEDLKQNRIKLKDVVKTIEEDDPSEDEMNQR 182

Query: 222 EAVVEGDDEVEDGDDEEEGGEGAAVSASLLQLKTDALERFATIKTLYGKAHKALVSKGSQ 281
             V+   DE++    ++            L+ +  A++                      
Sbjct: 183 SRVILLLDEIKHTYKKKRKVYAKLDDCCTLERRVTAIQ---------------------- 220

Query: 282 DKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRKVGMPRPH 341
            K  L  ++ I   L +I+    +I+R+ ++V   V  +   +R +              
Sbjct: 221 -KEILGFKEDIVNRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLSA------------ 267

Query: 342 FIKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQ------------RKLLALQD 389
           +I S    ++ ++ + + +  A+   P+    A  +  E+              L  LQD
Sbjct: 268 YILSTGKTQVEIQDIFRMLE-AREMNPVAASAALGMTVEELFSFKEMIIGKIEILNRLQD 326

Query: 390 HIGIPLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGN 449
                + DL+++  ++  G   A RAK+E+  +NLRLV+SIAKKYTNRGLQFLDLIQEGN
Sbjct: 327 KCCHNVTDLEEVLWRIKRGNTHAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGN 386

Query: 450 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQ 509
           IGLMKAVDKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINK+ R SR 
Sbjct: 387 IGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRY 446

Query: 510 ILQETGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATT 569
           ++QE G +P P  +A +M+ P +K++K+LKI+KEPIS+ETPIGD++DS LGDFIED    
Sbjct: 447 LVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAV 506

Query: 570 APVDAALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQ 629
           AP +  + + L E    +L  LTPRE +VLR RFGI   +DHTLEEVGK F+VTRERIRQ
Sbjct: 507 APAEEVVNTKLSEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQ 566

Query: 630 IEAKALRKLRHPSRSDKLRSFLDN 653
           IEAKALRKLRHP RS  LRS+ ++
Sbjct: 567 IEAKALRKLRHPVRSQMLRSYYES 590