Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 615 a.a., RNA polymerase, sigma 70 subunit, RpoD from Marinobacter adhaerens HP15

 Score =  693 bits (1788), Expect = 0.0
 Identities = 357/614 (58%), Positives = 444/614 (72%), Gaps = 5/614 (0%)

Query: 43  TRKTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAE 102
           ++K+RLK LI  GKE+G+LTYAE+NDHLP+D+ D +Q+E II   NDMGIQV +E P A+
Sbjct: 5   SQKSRLKDLIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIRMINDMGIQVCEETPDAD 64

Query: 103 DLLMSDNAPAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI 162
            LLM++       DE    EA AAL+ V+++ GRTTDPVRMYMREMGTVELLTREGEI I
Sbjct: 65  TLLMTEGDSTA--DEAAAAEAAAALAAVETDAGRTTDPVRMYMREMGTVELLTREGEIVI 122

Query: 163 AKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPNAAEEELAAEE 222
           AKRIE+G++ ++ A++  P T   ++   +++ + E RI +++ G +DP+ AE  +  + 
Sbjct: 123 AKRIEEGIRDVMAAVAHFPGTAGTVIQAYDRILENEGRISDIVTGFLDPDDAEPFMGEDT 182

Query: 223 AVVEGDDEVEDGDDEEEGGEGAAVSASLLQLKTDALERFATIKTLYGKAHKALVSKGSQD 282
                DD   D DD+++  E    +    +   +   RF  +      A+KAL   G  D
Sbjct: 183 TPESSDDSDSDSDDDDDSSEEETDNGPDPE---ETRLRFELLNEKLEAANKALAKHGRSD 239

Query: 283 KTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRKVGMPRPHF 342
           K   +   ++       +  +K  + L + VRS  D VRE ER I ++CVR+  MPR  F
Sbjct: 240 KKTQEALNELGQVFAPFKLANKAFDELVNVVRSTNDLVRENERAIMQICVRECKMPRKDF 299

Query: 343 IKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLALQDHIGIPLKDLKDIN 402
           IKSFPGNE NL+W +K     K Y   L      +   Q+++  +Q  + + + D+K+IN
Sbjct: 300 IKSFPGNETNLDWADKIAKSKKPYAAPLAERIDEVVRLQKRIQNVQTEVDLDVADIKEIN 359

Query: 403 KQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 462
           +++S GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
Sbjct: 360 RRVSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 419

Query: 463 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPAT 522
           RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQE G EP P  
Sbjct: 420 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 479

Query: 523 LAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDAALYSGLRE 582
           L  +MEMPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIED    +PVD+A   GLRE
Sbjct: 480 LGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDIQALSPVDSATAEGLRE 539

Query: 583 VTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 642
            T+ +L  LT RE+KVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
Sbjct: 540 ATRSVLAGLTARESKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 599

Query: 643 RSDKLRSFLDNNGS 656
           RSD LR F+D+ G+
Sbjct: 600 RSDHLRGFIDDQGN 613