Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 613 a.a., RNA polymerase sigma factor RpoD from Pantoea sp. MT58

 Score =  686 bits (1769), Expect = 0.0
 Identities = 359/617 (58%), Positives = 448/617 (72%), Gaps = 17/617 (2%)

Query: 45  KTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAEDL 104
           +++LK L+  GKE+G+LTYAE+NDHLP+D+VD++QIE II   NDMGIQV +EAP A+DL
Sbjct: 6   QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAPDADDL 65

Query: 105 LMSDNAPAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 164
           ++++N+     DE+  E A   LS+V+SE GRTTDPVRMYMREMGTVELLTREGEI+IAK
Sbjct: 66  MLNENSSDT--DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 123

Query: 165 RIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPNAAEEELAAEEAV 224
           RIEDG+  +  +++  P  I  +L   +KVE  E R+ ++I G +DPNA EE++A     
Sbjct: 124 RIEDGINQVQCSVAEYPEAITYLLDQYDKVEAGESRLSDLITGFVDPNA-EEDIAPTATH 182

Query: 225 V--------EGDDEVEDGDDEEEGGEGAAVSASLLQLKTDALERFATIKTLYGKAHKALV 276
           V          DDE ED +D++   +  ++   L      A E+F+ ++  Y      + 
Sbjct: 183 VGSELSEADRNDDEEEDEEDDDSSDDDNSIDPEL------AREKFSDLRKQYEATRSVIK 236

Query: 277 SKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRKVG 336
           SKG      +   Q +S      R   K  + L  S+R+M++ VR +ER I +LC+    
Sbjct: 237 SKGRSHAAAVAEIQNLSDVFKQFRLVPKQFDYLVGSMRTMMERVRTQERLIMKLCIELCK 296

Query: 337 MPRPHFIKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLALQDHIGIPLK 396
           MP+ +FI  F GNE N  W +  +A+ K +   L     ++    +KL  +++  G+ ++
Sbjct: 297 MPKKNFITLFTGNETNESWFKAALAMNKPWSEKLLEVQDDVMRSLQKLAQVEEETGLTIE 356

Query: 397 DLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 456
            +KDIN++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
Sbjct: 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 416

Query: 457 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGA 516
           DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQE G 
Sbjct: 417 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 476

Query: 517 EPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDAAL 576
           EP P  LA +M MPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIEDT    P+D+A 
Sbjct: 477 EPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT 536

Query: 577 YSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALR 636
              LR  T ++L  LT REAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQIEAKALR
Sbjct: 537 SESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 596

Query: 637 KLRHPSRSDKLRSFLDN 653
           KLRHPSRS+ LRSFLD+
Sbjct: 597 KLRHPSRSEVLRSFLDD 613