Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 619 a.a., RNA polymerase sigma factor RpoD from Dyella japonica UNC79MFTsu3.2

 Score =  683 bits (1762), Expect = 0.0
 Identities = 364/612 (59%), Positives = 446/612 (72%), Gaps = 5/612 (0%)

Query: 44  RKTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAED 103
           +++ +K LI  G E+G+LTYAEINDHLPDD+VD EQIE I+     +GI+V D AP A+ 
Sbjct: 8   QQSEIKALISKGLEQGYLTYAEINDHLPDDIVDPEQIEDIMAVLKGVGIEVHDAAPDADP 67

Query: 104 LLMSDNAPAVA-DDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI 162
           L  SDNA   A DDE   EEA A LS VDSE GRTTDPVRMYMREMGTVELLTREGEI I
Sbjct: 68  L--SDNASGTATDDEAAAEEAVALLSAVDSEVGRTTDPVRMYMREMGTVELLTREGEIAI 125

Query: 163 AKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLID-PNAAEEELAAE 221
           AKRIE+GL  +  A+++ P TI  +L   ++    + R+ E++ G  D   AA+  LAA 
Sbjct: 126 AKRIEEGLGQVQTALASFPLTIEMLLEEYDQHLDGKRRLSEILAGFADLEEAADAALAAA 185

Query: 222 EAVVEGDDEVEDGDDEEEGGEGAAVSASLLQLKTDALERFATIKTLYGKAHKALVSKGS- 280
           E      D   D D+E EG      +        +   R   ++  YGK  KA       
Sbjct: 186 EVEAADADGEADEDEETEGATEDEEAGPTGPDPEEVKRRMELLRDYYGKFQKASAKTSDI 245

Query: 281 QDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRKVGMPRP 340
            DK  +KL++Q++ E + ++  S +I+     +R +V+ +R  ER + ++ V++V MP+ 
Sbjct: 246 GDKKIIKLREQMAEEFLKLKLPSALIDSFVRKLRDVVNDIRHHERVLMDIFVKQVKMPKA 305

Query: 341 HFIKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLALQDHIGIPLKDLKD 400
            FIK+FP NE NLEW  +     + + P +      I  EQ KL +++  + +PL D+K+
Sbjct: 306 EFIKTFPSNEGNLEWANELGRKRQKWSPNIKTYKEAIDGEQEKLASIEHKLFLPLTDIKE 365

Query: 401 INKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 460
           IN+ MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
Sbjct: 366 INRTMSVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 425

Query: 461 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDP 520
           YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQ+ G EP P
Sbjct: 426 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREPTP 485

Query: 521 ATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDAALYSGL 580
             LA +MEMPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIEDT  ++P+++A  +GL
Sbjct: 486 EELAKEMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTNASSPIESATETGL 545

Query: 581 REVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 640
            E  +E+L  LTPREAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
Sbjct: 546 METVREVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 605

Query: 641 PSRSDKLRSFLD 652
           PSRS++LRSFLD
Sbjct: 606 PSRSEQLRSFLD 617