Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 664 a.a., RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  522 bits (1344), Expect = e-152
 Identities = 304/650 (46%), Positives = 411/650 (63%), Gaps = 44/650 (6%)

Query: 41  VETRKTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPA 100
           ++  +  +K +I   + RG++TY ++N  LP D V +EQIE +++  ++MGI + +E  A
Sbjct: 20  LDMSQAAVKKMIAEARTRGYITYDQLNQVLPPDQVSSEQIEDVMSMLSEMGINIIEEDEA 79

Query: 101 AEDLLMSDNAPAVADDEEVEEEA--EAALSTVDSE-FGRTTDPVRMYMREMGTVELLTRE 157
            +      +APA A  + VE  +  E A+ST  SE   RT DPVRMY+REMG+VELL+RE
Sbjct: 80  EDG-----DAPANASTQVVESSSSREVAVSTSSSETLDRTDDPVRMYLREMGSVELLSRE 134

Query: 158 GEIEIAKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVID------GLIDP 211
           GEI IAKRIE G   MI  +   P T   I    +++  E++ + +VID      G +D 
Sbjct: 135 GEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVIDLEATMGGAMDE 194

Query: 212 NAAEE---ELAAEE--AVVEGDDEVE-----------DGDDEEEGGEGAAVSASLLQLKT 255
           +       E+AA    A  E  DE E           D +D+E+     +++A    LK 
Sbjct: 195 DEESSSVVEMAANSPAAPSEKSDEPELDADGNPIAKTDDEDDEDDQANMSLAAMEAALKP 254

Query: 256 DALERFATIKTLYGKAHKALVSKGS------------QDKTYLKLQQQISAELMNIRFTS 303
             LE    I   Y +  +    + S             +  Y KL+ +I   +  +   +
Sbjct: 255 KVLETLDLIARDYAQLSEMQDLRISATLNEDESFSVEDESNYQKLRAEIVLLVNELHLHN 314

Query: 304 KVIERLCDSVRSMVDSVRERERKIQELCVRKVGMPRPHFIKSFPGNEINLEWVEKEIAV- 362
             IE L D +  +   +   +  + +L   +  + R  F++++ G E++  W+E+     
Sbjct: 315 NRIEALIDQLYGINRRIMAIDSSMVKLA-DQARINRREFVEAYRGYELDPTWLERMAEKP 373

Query: 363 AKGYGPILTRTAPNIQEEQRKLLALQDHIGIPLKDLKDINKQMSTGEAKARRAKREMTEA 422
            +G+   + R+   I+E +  +  +  ++G+ + + + I +Q+  GE +AR+AK+EM EA
Sbjct: 374 GRGWQAFIERSTTKIEELRSDMAQVGTYVGVDITEFRRIVQQVQKGEKEARQAKKEMVEA 433

Query: 423 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 482
           NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS
Sbjct: 434 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 493

Query: 483 IADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEEKIRKILKISK 542
           IADQARTIRIPVHMIETINK+ R  RQ+L E G EP P  LA K++MP EK+RK++KI+K
Sbjct: 494 IADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAK 553

Query: 543 EPISMETPIGDDDDSHLGDFIEDTATTAPVDAALYSGLREVTKEILDTLTPREAKVLRMR 602
           EPIS+ETPIGD++DS LGDFIED     P+D+A+   L+E T  +L +LTPRE +VLRMR
Sbjct: 554 EPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREERVLRMR 613

Query: 603 FGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLRSFLD 652
           FGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS KLRSFLD
Sbjct: 614 FGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 663