Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 744 a.a., RNA polymerase, sigma 70 subunit, RpoD from Paraburkholderia bryophila 376MFSha3.1

 Score =  888 bits (2295), Expect = 0.0
 Identities = 455/652 (69%), Positives = 538/652 (82%), Gaps = 9/652 (1%)

Query: 12  EILKAKSSKAKEKALLESAGATQA-ATPVDVETRKTRLKTLIKLGKERGFLTYAEINDHL 70
           E  KA+  +AKEKALL+ A ++ A  T  ++E R+++L+ LIKLGKERGFLTYAEINDHL
Sbjct: 93  EKAKARDRRAKEKALLKDAFSSSAPGTVEELEERRSKLRALIKLGKERGFLTYAEINDHL 152

Query: 71  PDDVVDAEQIESIITTFNDMGIQVFDEAPAAEDLLMSDNAPAVADDEEVEEEAEAALSTV 130
           PD+  + E IE II+TFNDMG+ V+++AP AE LL++DNAPA + D+EVEEEAE ALSTV
Sbjct: 153 PDNFTETEAIEGIISTFNDMGVAVYEQAPDAETLLLNDNAPAASSDDEVEEEAEVALSTV 212

Query: 131 DSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMIQAISACPTTIAEILAM 190
           DSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHM+ AISACPTTIA+ILAM
Sbjct: 213 DSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVMAISACPTTIADILAM 272

Query: 191 AEKVEKEEMRIDEVIDGLIDPNAAEEE---LAAEEAVVEGDDEVEDGDDEEEG-----GE 242
           AE+V  EE+RIDE++DGLID +A + +   +   EA+   DDE E+ D+E+E       +
Sbjct: 273 AERVANEEIRIDELVDGLIDADAEDADGFSVQEAEAIESEDDEAEEEDEEDEEEDDGTAQ 332

Query: 243 GAAVSASLLQLKTDALERFATIKTLYGKAHKALVSKGSQDKTYLKLQQQISAELMNIRFT 302
             A +A +  LK  +LE+FA I   + K  +A   +G + K+YLK Q+ I  ELM IRFT
Sbjct: 333 ATANAAQMEALKRASLEKFALISEWFDKMRRAFEKEGYKSKSYLKAQETIQNELMTIRFT 392

Query: 303 SKVIERLCDSVRSMVDSVRERERKIQELCVRKVGMPRPHFIKSFPGNEINLEWVEKEIAV 362
           ++ +ERLCD++R+ VD VR+ ER+I    V K GMPR  FI  FPG+E +LEW +K ++ 
Sbjct: 393 ARTVERLCDTLRAQVDEVRQVERQILHTVVDKCGMPRAEFIARFPGSETDLEWADKIVSE 452

Query: 363 AKGYGPILTRTAPNIQEEQRKLLALQDHIGIPLKDLKDINKQMSTGEAKARRAKREMTEA 422
              Y  ILTR  P I+E+Q++LL LQ  + +PLKDLK+ N+QM+ GE KAR+AKREMTEA
Sbjct: 453 GHAYSAILTRNIPAIREQQQRLLDLQARVVLPLKDLKETNRQMAAGELKARQAKREMTEA 512

Query: 423 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 482
           NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS
Sbjct: 513 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 572

Query: 483 IADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEEKIRKILKISK 542
           IADQARTIRIPVHMIETINKMNRISRQILQETG EPDPATLA KMEMPE+KIRKI+KI+K
Sbjct: 573 IADQARTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKIMKIAK 632

Query: 543 EPISMETPIGDDDDSHLGDFIEDTATTAPVDAALYSGLREVTKEILDTLTPREAKVLRMR 602
           EPISMETPIGDDDDSHLGDFIEDT T AP DAAL++ +R+V K++LD+LTPREAKVLRMR
Sbjct: 633 EPISMETPIGDDDDSHLGDFIEDTNTVAPADAALHASMRDVVKDVLDSLTPREAKVLRMR 692

Query: 603 FGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLRSFLDNN 654
           FGIEM+TDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKL+SFL+ N
Sbjct: 693 FGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN 744