Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 619 a.a., RNA polymerase, sigma 70 subunit, RpoD (RefSeq) from Shewanella sp. ANA-3

 Score =  702 bits (1812), Expect = 0.0
 Identities = 367/616 (59%), Positives = 460/616 (74%), Gaps = 10/616 (1%)

Query: 43  TRKTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAE 102
           T +++LK L+  GKE+G+LTYAE+NDHLP D+VD++QIE II   NDMGI+VF+EAP A+
Sbjct: 7   TPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAPDAD 66

Query: 103 DLLMSDNAPAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI 162
           D++MS++      DE+  EEA AAL+TV+SE GRTTDPVRMYMREMGTVELLTREGEI I
Sbjct: 67  DMMMSEDNT----DEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVI 122

Query: 163 AKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPNAAE-----EE 217
           AKRIE+G+  +  +++  P  IA IL   ++ E +E+R+ ++I G ++P+  +       
Sbjct: 123 AKRIEEGINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDIISGFVNPDEEDLGPTATH 182

Query: 218 LAAEEAVVEGDDEVEDGDDEEEGGEGAAVS-ASLLQLKTDALERFATIKTLYGKAHKALV 276
           + +E +  + DDE +D DDE+E G+G      +      +A ERF+ ++T Y  A K + 
Sbjct: 183 IGSELSEEDLDDEDDDEDDEDEDGDGEGDDDGNKGPDPEEARERFSQLRTAYENALKIID 242

Query: 277 SKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRKVG 336
           +KG +    ++   +I       R   K  +RL  S+RSM+D VR +ER + +LCV +  
Sbjct: 243 AKGREHPESIQALFEIGEIFKEFRLVPKQFDRLVKSMRSMMDRVRVQERLLMKLCVEQAK 302

Query: 337 MPRPHFIKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLALQDHIGIPLK 396
           MP+ +F+K F GNE NL+W + E    K Y   L     ++Q  + KL A+++  G+ + 
Sbjct: 303 MPKKNFVKFFTGNETNLDWFDAEKNSTKPYAEGLRMVEEDVQRCRSKLAAIEEETGLVIA 362

Query: 397 DLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 456
            +KDIN++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
Sbjct: 363 AIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 422

Query: 457 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGA 516
           DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQE G 
Sbjct: 423 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 482

Query: 517 EPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDAAL 576
           EP P  LA +M MPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIEDT    P+D+A 
Sbjct: 483 EPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT 542

Query: 577 YSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALR 636
              L+  T E+L  LT REAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQIEAKALR
Sbjct: 543 SESLKSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 602

Query: 637 KLRHPSRSDKLRSFLD 652
           KLRHPSRS+ L+SFLD
Sbjct: 603 KLRHPSRSEILKSFLD 618