Pairwise Alignments

Query, 1044 a.a., heavy metal efflux pump, cobalt-zinc-cadmium from Dechlorosoma suillum PS

Subject, 1075 a.a., heavy metal efflux pump, CzcA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  646 bits (1666), Expect = 0.0
 Identities = 368/1078 (34%), Positives = 604/1078 (56%), Gaps = 65/1078 (6%)

Query: 1    MLAKIIEWSGRNRFLVLLATLFIIVAGVVAVVRTPLDALPDLSDVQVIVYTEYPGQAPQV 60
            ML K IE + +NR LV+LA L  + A V  + +  LDA PD+++VQV + TE  G A + 
Sbjct: 1    MLQKAIEAAIKNRLLVVLALLAAVAASVAMLPKLNLDAFPDVTNVQVTINTEAEGLAAEE 60

Query: 61   VEDQVTYPLTSAMLSVPKSKVVRGFSFFGASFVYIIFEDGTDIYWARSRVLEYLNFAAGR 120
            VE  ++YP+ SAM ++P    VR  S  G S V ++F +GTDIY+AR +V E L  A   
Sbjct: 61   VEKLISYPVESAMYALPAVTEVRSLSRTGLSIVTVVFAEGTDIYFARQQVFEQLQAAREM 120

Query: 121  MPKGV-TPQIGPDATGVGWVYQYAVLAKNKT---LAELRTLQDWYLRYQLTKAHGVAEVA 176
            +P GV  P+IGP+ +G+G +YQY + A        AELR+L D+ ++  L    GV +V 
Sbjct: 121  IPSGVGVPEIGPNTSGLGQIYQYILRADPSAGINAAELRSLNDYLVKLILMPVGGVTDVL 180

Query: 177  SIGGFVQTYQVTVDPVKLRSYGIPLSKVSQVIRDSNRDVGGRVVEMAETEYMVRGKGYL- 235
            S GG V+ YQV VDP KLR+YG+ +++VS+ +  +NR+ GG  ++  + + +VRG G L 
Sbjct: 181  SFGGEVRQYQVQVDPNKLRAYGLSMAQVSEALESNNRNAGGWFMDQGQEQLVVRGYGMLP 240

Query: 236  ---RGTADIENLVVKAQGGTPVMIRDIARVELAPDERRGLTELNGE---------GEVVS 283
                G A I  + +    GTPV + DIA+V+   + R G   +            GEVV+
Sbjct: 241  AGEAGLASIAQIPLTEVRGTPVRVGDIAKVDFGSEIRVGAVTMTRRDEAGQAQALGEVVA 300

Query: 284  GIAMARYGQNALEVIHNLKEKIGEISSGLPEGVTIETVYDRSELIHRAIDTLKHTLAEES 343
            G+ + R G N    I ++  +I  I   LP+GV+ E  YD+++L+ +A+ T++  L    
Sbjct: 301  GVVLKRMGANTKATIDDIDARINLIEQALPKGVSFEVFYDQADLVDKAVATVRDALLMAF 360

Query: 344  VIVALVCVVFLLHLRSALVAILMLPVGVLISFISMRLLGMNSNLMSLGGIAIAIGAMIDA 403
            V + ++  +FL+++R+ L+ +L +PV + ++ + M   G+++NLMSLGG+A+AIG ++D 
Sbjct: 361  VFIVVILALFLVNIRATLLVLLSIPVSIGLALMVMSYYGLSANLMSLGGLAVAIGMLVDG 420

Query: 404  AIVMIENAHKHIERLPENHSHSERVEA-----------------------------MIAA 434
            ++VM+EN  KH+ +    H    R  A                             ++ A
Sbjct: 421  SVVMVENIFKHLTQPDRRHLTQARARADGEADPYHGDEDGGVNADDDDHQGNMAVRIMLA 480

Query: 435  CKEVGPALFFSLLIITVSFLPVFTLEAQEGRLFSPLAYTKTFSMAGAALLSVTLVPVLMM 494
             KEV   +FF+  II V F P+F LE  EG+LF P+A +   +M  A L+++  VP L +
Sbjct: 481  AKEVCSPIFFATAIIIVVFAPLFALEGVEGKLFQPMAVSIILAMISALLVALIAVPALAV 540

Query: 495  -LFIRGKIMPEAKNPVNRFLIWGYRPIIAWVMRRKTATIIAAIVAMLISIYPASKLGSEF 553
             LF RG ++ E+   + R L   YR +++  + R    +++A++  ++S+    +LG+EF
Sbjct: 541  YLFKRGVVLKESV--ILRPLDNAYRKLLSATLARPKMVVLSAVIMFVMSMALLPRLGTEF 598

Query: 554  MPTLNEGTLLYMPASLPGMSITKAAELLQTQNKIIKSFPEVASVYGKAGRANTATDPAPT 613
            +P L EGT+       P  S+  + ++      ++  FPEV     + G      DP P 
Sbjct: 599  VPELEEGTINLRVTLAPTASLGTSLDVAPKLEALLLQFPEVEYALSRIGAPELGGDPEPV 658

Query: 614  EMFETVINLKPESEWRQGMTTDKLIAEMDKALQ-FPGVSNAWTMPIKARIDMLSTGIRTP 672
               E  I LKP  EW+   +   L   M++ L  FPG+   ++ PI  R+D L +G++  
Sbjct: 659  SNIEIYIGLKPIEEWQSASSRLALQRLMEEKLSVFPGLLLTFSQPIATRVDELLSGVKAQ 718

Query: 673  IGIKVFGKDLSEMESLAREIETVVKEVPGTTSAFAERITGGYYLNIEPDRTQLARYGLAV 732
            + IK+FG DL+ +    + +  +V ++PG      E+++G   L + PDR+QLARYG++V
Sbjct: 719  LAIKLFGPDLAVLSDKGQVLTDLVAKIPGAVDVSLEQVSGEAQLVVRPDRSQLARYGISV 778

Query: 733  GELQDVIGQALGGEMVTTTVEGRERFGVTVRYPRELRSDPQQIAQQVLVPTADGAMIPLG 792
             ++  ++ Q +GG      ++G  R+ + +R   E RS P  + + +L+   +GA++ LG
Sbjct: 779  DQVMTLVSQGIGGASAGQVIDGNARYDINLRLAAEFRSSP-DVIKDLLLSGTNGAIVRLG 837

Query: 793  QLAKVQVAKGTPGIRTENALLSAYIFVDIRDRDIGGYVADAKKAVAEKVKFPPGYYATWS 852
            ++A V+V    P IR ++      +  ++  RD+G  V D   A+  K   P GY     
Sbjct: 838  EVASVEVEMAPPNIRRDDVQRRVVVQANVAGRDMGSIVNDI-YALVPKADLPAGYTVIVG 896

Query: 853  GQFESMERAIEKMKVVVPVTLLIIFLLLYLNFKRLTETLIVMLSVPFALVGGVWLMWLLG 912
            GQ+E+ +RA +K+ +VVPV++ +I LLLY +F  + + L++M +VP AL+GG+  +++ G
Sbjct: 897  GQYENQQRAQQKLMLVVPVSIALIALLLYFSFGAVKQVLLIMANVPLALIGGIVALFVSG 956

Query: 913  YNLSVAVAVGFIALAGVAAETGVVMLIYLDHAWEELKTKRRASGQEPSLGDLYEAIMEGA 972
              LSV  ++GFI L GVA   GVV++  ++        +RR SG+      LY+++ EG 
Sbjct: 957  TYLSVPSSIGFITLFGVAVLNGVVLVDSIN--------QRRQSGE-----SLYDSVYEGT 1003

Query: 973  VERVRPKMMTVVAIMAGLLPIMWGTGTGSEVMSRIAAPMVGGMISSTILTLAVIPAIY 1030
            V R+RP +MT +    GL+PI+  +G GSE+   +A  ++GG+ SST LTL V+P +Y
Sbjct: 1004 VGRLRPVLMTALTSALGLIPILVSSGVGSEIQKPLAVVIIGGLFSSTALTLLVLPTLY 1061