Pairwise Alignments

Query, 445 a.a., ribosomal RNA small subunit methyltransferase RsmB from Dechlorosoma suillum PS

Subject, 416 a.a., tRNA and rRNA cytosine-C5-methylase (RefSeq) from Shewanella amazonensis SB2B

 Score =  142 bits (359), Expect = 2e-38
 Identities = 109/300 (36%), Positives = 146/300 (48%), Gaps = 10/300 (3%)

Query: 151 ELLARAAGKPSGAWWHPDWWLSRLRRAYPRD-WEAIATAGNGQPPMTLRVNLARGSREEY 209
           E L RA  +P      PDW L +L +A   D W A   A +  P   LR N  + +R+E 
Sbjct: 121 ERLERAKAEPLLWDGCPDW-LDKLGQAELGDTWAAERAALSLAPKRYLRTNGLKCTRDEL 179

Query: 210 QARLDAAGIAAVPLGS--AALLLQKPVPVDALPGFFDGFVSVQDWGAQRAAELLDARAGQ 267
             RL A G+  VP+    +AL +     +     F DG+   QD G+Q  A  LD + G 
Sbjct: 180 ATRLAAEGVQTVPVDGVESALEVTSNAALFRTKAFADGWFEQQDAGSQLVAAALDVKPGM 239

Query: 268 RVLDACAAPGGKTAHILEQAGVD--LLALDMDGLRCRRVEENLSRLGLRAVVRAADARCP 325
           RV+DACA  GGKT H+         LLA+D++  +   ++E   R G   V     A   
Sbjct: 240 RVIDACAGAGGKTLHLAAAMTGKGRLLAMDVEQWKLDNLKERARRAGAHNVETRLIAGSK 299

Query: 326 DDWWDGRPFDRILADVPCSASGVVRRHPDSKWLRRETDIAQFARVQRQILEVLWPTLAVG 385
                    DR+L DVPCS  GV++R+PD+KW   E  +     +Q  IL      + VG
Sbjct: 300 TIKRLKLSADRLLLDVPCSGLGVLKRNPDAKWRDTEERLPVLMELQAHILGSYSRMVKVG 359

Query: 386 GRLLYATCSVFPEENSQQVSAFLARHGDARRIGIDGADELQLLPGSEHDGFYYALLEKTA 445
           G L+YATCS+ P EN  QV AFLA + + R +     DE      S  DGFY A LE+ A
Sbjct: 360 GILVYATCSIMPCENRGQVDAFLAANPNFRLL----EDENITPATSGFDGFYLAKLERIA 415