Pairwise Alignments

Query, 750 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

Subject, 1077 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  225 bits (573), Expect = 1e-62
 Identities = 122/317 (38%), Positives = 187/317 (58%), Gaps = 4/317 (1%)

Query: 427 GSDHISHVALIGHDLTQLREEQRQ-LWLSDAIVAQTHEAVMVTDASERIFRVNPAFCLMT 485
           GSD ++ ++   + +   R++  Q L  + A+   + E +MVTDA   I  VNPAF  +T
Sbjct: 482 GSDELARMSRAMNRMLSERQKANQALSRAAAVFNYSAEGIMVTDADNHIELVNPAFSQIT 541

Query: 486 GYAPEEVEDHSPGLLASGVHDAEFYHHMHQALQSRGFWQGEVWQRHKDGHLFACLLDIST 545
           GY+ E+V+  SP +L+S  H + FY  M +ALQ    W+GE+W + KDG ++   L I+ 
Sbjct: 542 GYSLEDVKGRSPSMLSSKRHPSHFYTAMWEALQKDSKWEGEIWNKRKDGQVYPEYLAITV 601

Query: 546 LRDGEGRLTHYVHVFSDITEQKHLAEQMEHLAHFDGLTQLPNRNLFQDRLCQALARAERN 605
           +R+  G +  ++ +F DI+++K   + + + AHFD LT LPNR LF +RL   +  A+ +
Sbjct: 602 VRNERGEIIQHIGLFMDISKRKQYEQDLWYQAHFDTLTGLPNRKLFNERLQHEIQLAQHD 661

Query: 606 GTGLALMFMDLDGFKAVNDSAGHNTGDRLLVEVARRITSVLRKVDSVSRQGGDEFTVLLE 665
              LA++ +DLD FK +ND  GH TGD LL +VA+R+ ++  K D ++R GGDEF ++L 
Sbjct: 662 SRKLAILLIDLDQFKYINDVQGHATGDLLLQDVAKRLENIAGKNDLIARIGGDEFVLILP 721

Query: 666 SLNNGQGIAETEEAARRIIAAINEPVLLDGRSFRVGASIGIAFYPADGDNVELLMARADA 725
            + N   I   E  A RII  ++ P  L+ R  ++ AS GI  YP DG +V  L    + 
Sbjct: 722 RVTNEFAI---EHMASRIIETLSTPFNLNEREIQISASFGIGVYPEDGLDVSSLTRNTEM 778

Query: 726 AMYQAKARGKNRHLCWT 742
           AMYQAK  G+N    +T
Sbjct: 779 AMYQAKDAGRNNFKYFT 795