Pairwise Alignments

Query, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1042 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  326 bits (836), Expect = 6e-93
 Identities = 261/825 (31%), Positives = 388/825 (47%), Gaps = 72/825 (8%)

Query: 429  ELADAREESSRQLVLLQAIMDSMPNPV----FFKDAEGRFLGCNRAYEDTFGVGRGQIVG 484
            E   AR +   +L   +  +D++ N +     + DA+ R+   N+ Y    G     ++ 
Sbjct: 243  EAVSARNQKQLELQKSRRYIDNITNVIPIQLAYVDAQSRYRFINQHYLQWLGKTEEDVLD 302

Query: 485  KTVRELPFLSEEEKQELQAVSEAIIRDGIMMHRELQLPFADGLRHDTLYWANGFSREDGT 544
            +TV  +     +  Q ++   + ++     +     +      R   + +      +DG 
Sbjct: 303  QTVEAVQ--PADVYQLIKPYQQGVLAGNKQVFEAETIDADQAPRFFHITYVPDVG-DDGQ 359

Query: 545  PGGMVGVVVDISERKLMEEE--------------LRRARATAEEATEAKSLFLANMSHEI 590
              G    V D++  KL E +              L  AR  AE A + K  FLA MSHEI
Sbjct: 360  VEGYFICVEDLTRMKLNERKIETYAQEMEFSNWALSEAREKAEVAAKTKEDFLACMSHEI 419

Query: 591  RTPMNAIIGMAHLAMKTELTPKQRDYVGKIHNAAISLLGIINDILDFSKIEAGKLSLEYV 650
            RTPMN +IG+  L  +T+L+P Q+ YV     +A SLL ++NDILDFSKIE+GK  +E +
Sbjct: 420  RTPMNGVIGILGLLGETQLSPMQKRYVDVASASADSLLSLLNDILDFSKIESGKFEIEAI 479

Query: 651  PFSLEDVLDNVSGLLGLKANEKGLELLFNVNAGTPAGLVGDPLRLNQILTNLVSNAIKFT 710
             F L ++LD     + LK  E+ L L  ++       +VGDP RL QIL NLV NAIKFT
Sbjct: 480  EFDLVELLDLFVQSVSLKLEERHLPLFVDITQLQYRYVVGDPSRLRQILVNLVGNAIKFT 539

Query: 711  ERGQITLTTRPVDQAGDRVKLQFWIEDMGIGMSREQLLHLFQAFTQADGSTTRKYGGTGL 770
            E G I L           V L   +ED GIG+++E+L  LF  F Q D STTR +GGTGL
Sbjct: 540  EEGWIALRLSNRLSESGEVLLSCEVEDTGIGIAKEKLAMLFNPFIQVDSSTTRMFGGTGL 599

Query: 771  GLSISRRLVEMMGGTIWADSTLGEGSTFCFTAWFGRAEELARPRTLPASLAGL---RVLV 827
            GLSI++RL E+M G I   S    GS F FT      ++LA    +    AGL   RV +
Sbjct: 600  GLSIAKRLCELMQGEIKVRSQQEVGSIFSFTL----TQQLADSDKMIDWRAGLSPERVTL 655

Query: 828  ADDNGAAREILGEALRHLDLRPDLVASGAEALAQLTEMQGGADPYRVLFLD----WQMPD 883
                GA   +LGE L     R   +    +A+ +   +     P R  F++    W+  +
Sbjct: 656  MGQLGAFERMLGELLTSWGARVSYLEE-EDAILETDVIIYSFAPRREAFVEELNAWR--E 712

Query: 884  LDGVSTLHKLQQALPQAQWPRVVMVTAYDQEELRRQTENLGICGILVKPVSASTLFDVLV 943
            L G        + LP        +++ + Q E  +Q   +   G   +P++   L   L 
Sbjct: 713  LVGQHADRPNTRVLP--------LLSYWQQTEFEKQDARVPHLG---RPLNIRQLIRALS 761

Query: 944  SLVDADNAPATPLHIAAPQTRIDGMRILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQA 1003
               D +        I  P +  D  ++LL EDN++NQ +A+ +L  +G Q  VA +G +A
Sbjct: 762  DRADEEMIEPVIEPIVEP-SMPDKPKVLLVEDNKVNQMVALGMLHQLGVQADVASNGREA 820

Query: 1004 VELLERSPDDSFDLVLMDLQMPHLDGYDATERLRCQQ---RFAHLPILAMTAHAMPEERE 1060
            + LL     + + L+LMD  MP +DG+ AT  +R  Q   +F  LPI+A+TA+AM  +RE
Sbjct: 821  LALLSALQGNPYQLILMDCLMPEMDGFQATAAIREGQGGSQFCALPIIALTANAMKGDRE 880

Query: 1061 RCLAIGMNDHLAKPIDPTALAATLARW-------YEERPGASAPA---PTPAKDGTDALP 1110
             C+  GM+D+L KP+  + L   L RW       YE   G        PTP +  +    
Sbjct: 881  HCIRAGMDDYLTKPLVLSVLKECLYRWFSLSQQNYEAALGHDPDVETLPTPIEAESQLF- 939

Query: 1111 PIPGVNTTQGLARMAGNQALYRRLLLRFVDTQTGTGEHIRQALADGDITAAEHLAHTLKG 1170
                 +    LA M+G++AL   +L  FV+      +   + +A  D TA     H +KG
Sbjct: 940  -----DRDSALALMSGDEALLDEVLQVFVEEMQDHRKAFIEGIAAADCTAIRSSVHAIKG 994

Query: 1171 VAGNIGAEVLQQKATALDQALRRND------GQGQKLESLRQRLA 1209
             A N+    L + A  L+   RR D      G+   LE L   LA
Sbjct: 995  AASNLSMTALVELARQLEADARRGDLQAVLAGREAFLELLEDTLA 1039