Pairwise Alignments

Query, 2039 a.a., chemotaxis protein histidine kinase-like protein from Dechlorosoma suillum PS

Subject, 695 a.a., putative CheA signal transduction histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  246 bits (629), Expect = 6e-69
 Identities = 200/688 (29%), Positives = 328/688 (47%), Gaps = 65/688 (9%)

Query: 1255 DLD-EQLLPIFLEEAQELTQSITEQLRLWHDDPHDADVARALARLLHTLKGSARMAGAMN 1313
            D+D  Q   +F EE+ E    +  +L        D +    + R  H++KG +   G M 
Sbjct: 2    DIDLSQFSQVFFEESIEGLAIMESELLKLDVAAPDPETINTIFRAAHSIKGGSATFGFMQ 61

Query: 1314 LGELTHTLETRVEQAHKAGAA-EAALIEEIQIAFDAIAQIVERLASGDTLDTP-LPVELL 1371
            +   TH LET +++        +   ++ + ++ D +  + E L S    + P LP   L
Sbjct: 62   VANYTHLLETLLDEIRDGRRQMQPDHVDMLLLSVDLLRGMFEALMSQAEFNDPKLPELEL 121

Query: 1372 ALPETAEADLAPAMPETQAAPASAEMPAAVAQPERPAAEAPATVQVAAAEPEVD-AAAAS 1430
             L  T      P+  ++ + P +     +     +   +A A +     +P +  A  AS
Sbjct: 122  RLNNTLANQ--PSQTQSISPPQATMASDSKTLCWQIDFKAGADIMRCGNDPMLMFAELAS 179

Query: 1431 RATLRVRSDLMDRLVNEAGELSIARARIEGEMRSLKDSLLDLTENVIRLRRQLREVEIQ- 1489
            + TL   ++L+        +       +   +R + D  L+  + V        E+  Q 
Sbjct: 180  KGTLT--AELLPVSFPAWDDFDPEACYLHWRLRLITDEPLEKLKEVFEWVEDECEISYQQ 237

Query: 1490 --------AETQIQARTAEAEVAHAGFDP-----------LEFDRFTRFQELTRMMAESV 1530
                      T++ + + ++EV      P           L  D+    Q+ +   A+S 
Sbjct: 238  TAAAPSADTSTEMLSPSPQSEVDPPVAAPDVIALTPQVQALATDKAVASQKQSAAAAKSG 297

Query: 1531 ND----VATVQQNLLKNL-----------------DEAN--AAIIAQARLN------REL 1561
                  V+T + ++L N+                 DE N  + ++ Q  L       R+L
Sbjct: 298  ESSSIRVSTEKIDMLINMVGELVITQAMLGQIGQQDEINQESLLLLQQGLEQLASHTRDL 357

Query: 1562 QQSLMSVRMVPFSSQTERLHRIVRQTAKEVGKRANLEIVGGQVELDRGVLDKMVAPLEHM 1621
            Q+S+M +RM+P S    R  R+VR   +++GK+  L + G   ELD+ VL+K+V P+ H+
Sbjct: 358  QESVMQIRMLPISFAFNRFPRLVRDIGQQLGKKVELILKGEDTELDKTVLEKIVDPMVHL 417

Query: 1622 LRNSVAHGLESREGRLAAGKEEIGEIELKVAQEGNEIIITMADDGAGLDLQRIRAKAESQ 1681
            +RNS+ HGLES E RLA GK E G I L    +G  III +ADDGAGL+  +I  KA  +
Sbjct: 418  VRNSLDHGLESPEARLAQGKSETGTIMLNAYHQGGCIIIEIADDGAGLNTHKILEKARQK 477

Query: 1682 GLLAAGEEADDARLADLIFAPGFSTAGEVSQIAGRGVGMDVVRTEVTNLGGRLEMQSVAG 1741
            GL+ A EE  +  +  LIF PGFSTA  VS ++GRGVGMDVV+  +  L G +E++S AG
Sbjct: 478  GLVGAEEELSEEAIHQLIFRPGFSTADAVSDLSGRGVGMDVVKRNIHELNGSIELKSEAG 537

Query: 1742 KGLTFRIYLPLTLAVTQALIVRVGNRRYAIPSAMIAQVQEVKEQVLAGIRETGQVEWLGN 1801
            KG  F I LPLTLA+    ++R+G   Y +P   I +  +V    +  + +  ++  L +
Sbjct: 538  KGSRFTIRLPLTLAILDGQLIRIGKHIYVVPLVSIYESLQVPTNRINRLSDGHELIRLRD 597

Query: 1802 RYPYHFLP--HLLGEPQALPEARRL--SWVLLLRSGTQRAAIQVDELFGNQEIVVKNVGP 1857
             Y    LP   +  E     +AR +    V+++    ++A + VDEL   Q++V+K++  
Sbjct: 598  EY----LPVIKMYREFNHDADAREIKDGLVMVVDHNNEKAGLLVDELLAQQQVVIKSLEE 653

Query: 1858 QLARVIGIAGATVLGDGQVLLILNPVAL 1885
               R+ GI+GAT+LGDG V LI++   L
Sbjct: 654  NYTRIPGISGATILGDGTVALIIDVAGL 681



 Score = 33.5 bits (75), Expect = 1e-04
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 52  HQVHGALAIVGLDGVTQFTEALEAFLADLESGKRPADDAAVDLVRRSLQAIRHYLDDLLN 111
           H + G  A  G   V  +T  LE  L ++  G+R      VD++  S+  +R   + L++
Sbjct: 48  HSIKGGSATFGFMQVANYTHLLETLLDEIRDGRRQMQPDHVDMLLLSVDLLRGMFEALMS 107

Query: 112 -GEPNQP 117
             E N P
Sbjct: 108 QAEFNDP 114



 Score = 28.1 bits (61), Expect = 0.004
 Identities = 16/69 (23%), Positives = 32/69 (46%)

Query: 691 AELLSIFLEEAQEVLGTIGSHIGLLREQPHNVDFLTTIRRSFHTLKGSGRMVGLKDLGET 750
           ++   +F EE+ E L  + S +  L     + + + TI R+ H++KG     G   +   
Sbjct: 6   SQFSQVFFEESIEGLAIMESELLKLDVAAPDPETINTIFRAAHSIKGGSATFGFMQVANY 65

Query: 751 AWAIEQVLN 759
              +E +L+
Sbjct: 66  THLLETLLD 74



 Score = 27.7 bits (60), Expect = 0.006
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 1099 STLYQIFMEEAQGHLEALQRQFGLLETD---PEMPTAEPFTRAAHTLGSIAGTIGLDAIN 1155
            S   Q+F EE+   L  ++ +  LL+ D   P+  T     RAAH++   + T G   + 
Sbjct: 6    SQFSQVFFEESIEGLAIMESE--LLKLDVAAPDPETINTIFRAAHSIKGGSATFGFMQVA 63

Query: 1156 RLGRALEHALLRRDQSAHPASLEALEIIRLAISSLEEMVASVAAQ 1200
                 LE  L            + ++++ L++  L  M  ++ +Q
Sbjct: 64   NYTHLLETLLDEIRDGRRQMQPDHVDMLLLSVDLLRGMFEALMSQ 108