Pairwise Alignments

Query, 434 a.a., ABC-type branched-chain amino acid transport system, periplasmic component from Dechlorosoma suillum PS

Subject, 373 a.a., amino acid ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

 Score =  198 bits (503), Expect = 3e-55
 Identities = 120/331 (36%), Positives = 175/331 (52%), Gaps = 5/331 (1%)

Query: 45  TVKIGHASPLTGPQAHIGKDNEYGATLAIEELNAKGLEIGGAKVKFELISDDDQADPKQG 104
           TVKI  A P+TG  A  G   + GA  AIE++NA G   G    KFE +  DD  +PKQ 
Sbjct: 28  TVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAG---GANGNKFEAVMMDDACEPKQA 84

Query: 105 TTVAQKFVDAKVNGVIGHLNSGTTIPASKIYFDAGIPQISGSATNPTYTK-QGFATAFRV 163
             VA K V   +  VIGH+ SG+TIPAS IY + G+  I+ SAT P  T+ +     FR 
Sbjct: 85  VAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKFIFRT 144

Query: 164 MANDEQQGKALAQFAAKTLAAKSVAIIDDRTAYGQGLADEFKKAAEAAGLKVVASEYTND 223
           +  D+QQG A A++  + L  K VA++ D+ +YGQG+A   K A +AA + VV  E  N 
Sbjct: 145 IGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASSVKAALDAAKVPVVVFEGINA 204

Query: 224 KATDFKAILTKIKSKKPDLIFYGGMDPQGGPMAKQMKELGLKAKFLTGDGGCTPNFITLA 283
             +D+ AI+TK+KS+  D +++GG  P+ G + +Q +E G+KA F+  +G    +   +A
Sbjct: 205 GDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGIKAVFMGPEGVGNKDITAIA 264

Query: 284 GAAAEGQYCSLPGVPLDKMPGGTVFKDKFVGKFKTEIQLYAPYVYDATMVLVDAMKRANS 343
           G A+EG   +LP       P        F    +     +    Y    ++ DA+  A S
Sbjct: 265 GPASEGMLVTLP-ADFAADPANAALVKAFAAAKRDPNGPFQMPAYSGVKIIADAIAGAKS 323

Query: 344 VEPAKYLPEIGKTSFQGVTAKIGFDEFGDLK 374
            +P K    I   SF+     + +D+ GDLK
Sbjct: 324 TDPEKVAAYIHANSFKTPIGNVEYDKKGDLK 354