Pairwise Alignments

Query, 360 a.a., Holliday junction DNA helicase, RuvB subunit from Dechlorosoma suillum PS

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score = 46.2 bits (108), Expect = 3e-09
 Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 70  VLLFGPPGLGKTTLAHIVAAEMGVNLRQTSGP------VLERAGDLAAILTNLEPH--DV 121
           VLL GPPG GKT LA  VA E G N    +GP      V E   +L  I    E +   +
Sbjct: 214 VLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSI 273

Query: 122 LFIDEIHRLSPVVEE 136
           +FIDEI  ++P  +E
Sbjct: 274 IFIDEIDAVAPKRDE 288



 Score = 39.7 bits (91), Expect = 3e-07
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 70  VLLFGPPGLGKTTLAHIVAAEMGVNLRQTSGPVL--ERAGDLAAILTNL------EPHDV 121
           VLLFGPPG GKT LA  VA E   N     GP +  +  G+    +  +          V
Sbjct: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTV 603

Query: 122 LFIDEIHRLSP 132
           +F DEI  ++P
Sbjct: 604 IFFDEIDSVAP 614