Pairwise Alignments

Query, 1427 a.a., DNA-directed RNA polymerase, beta subunit from Dechlorosoma suillum PS

Subject, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

 Score = 1317 bits (3408), Expect = 0.0
 Identities = 663/940 (70%), Positives = 782/940 (83%), Gaps = 15/940 (1%)

Query: 488  EVREQLTLSPRDIVESIKLLVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLVRVE 547
            +  EQ TL   DI+E +K L+ +RNG+GE+DDIDHLGNRR+RSVGE+AENQFR GLVRVE
Sbjct: 413  DAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472

Query: 548  RAVKERLSQAESDNLMPHDLINAKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSA 607
            RAVKERLS  + DN+MP DLINAKPISAA+KEFFGSSQLSQFMDQ NPLSE+THKRR+SA
Sbjct: 473  RAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISA 532

Query: 608  LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARTNSYGFLETPYR 667
            LGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ FAR N YGFLETPYR
Sbjct: 533  LGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYR 592

Query: 668  KVVDGKVTDQIEYLSAIEEGAYVVAQANAALGADGTLVDELVTCREKGETILAEPSRVQY 727
            +VV+G VTD+++YLSAIEEG +V+AQANA L  +G   DELVT R+KGE+ L     V Y
Sbjct: 593  RVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDY 652

Query: 728  MDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDS 787
            MDVA  Q+VS+AASLIPFLEHDDANRALMGANMQRQAVP LR EKPLVGTGIER VAVDS
Sbjct: 653  MDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDS 712

Query: 788  GTAVQALRGGVVDYVDASRVVVRVHDDETVPGEVGVDIYNLTKYTRSNQNTNINQRPLVK 847
            G    A RGGV+  VDASR+VV+V+++E +PGE G+DIYNLTKYTRSNQNT INQRP V 
Sbjct: 713  GVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVM 772

Query: 848  MGDIIAKGDVVADGASTDKGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIH 907
             G+ +A+GDV+ADG STD GELALGQNM IAFMPWNGYNFEDSIL+SERVV +DR+T+IH
Sbjct: 773  PGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIH 832

Query: 908  IEELTVVARDTKLGPEEITRDIASLGEVQLSRLDESGVVYIGAEVEAGDVLVGKVTPKGE 967
            I+EL+ VARDTKLG EEIT DI ++GE  LS+LDESG+VYIGAEV+ GD+LVGKVTPKGE
Sbjct: 833  IQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGE 892

Query: 968  TQLTPEEKLLRAIFGEKASDVKDTSLRVPSGIAGTVIDVQVFTREGIERDKRAQSIIDDH 1027
            TQLTPEEKLLRAIFGEKASDVKDTSLRVP+ +AGTVIDVQVFTR+G+E+DKRA  I    
Sbjct: 893  TQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQ 952

Query: 1028 LRGYKQDLADQMRIVERDTFARVGRLITGKPANGGPKKLAKGTVVTQEYLDGIDPHNWFD 1087
            L+  K+DL ++ +I+E    ARV  ++           LA G   T+  L  I+   W +
Sbjct: 953  LKEAKKDLTEEFQILEGGLLARVRSVL-----------LAGG--YTEAKLGSIERKKWLE 999

Query: 1088 VRMADEEVAQQLEQLKESLEQTRKDFDIAFEEKRKKLTQGDELPPGVQKMVKVYVAVKRR 1147
              + +EE+  QLEQL E  ++ + DFD  FE KR+K+TQGD+L PGV K+VKVY+AVKRR
Sbjct: 1000 QTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059

Query: 1148 LQPGDKMAGRHGNKGVVSRIVPVEDMPYMADGRPVDIVLNPLGVPSRMNVGQILEVHLGW 1207
            +QPGDKMAGRHGNKGV+S+I PVEDMPY  +G+PVDIVLNPLGVPSRMN+GQILEVHLG 
Sbjct: 1060 IQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGL 1119

Query: 1208 AAKGLGYKIGDMLQAGAKAAEVRKFLEEIYN--SEGKKENLNELNDQEIMELAGNLTTGV 1265
            AAKG+G KI  M++   + A++R+FL+++Y+     ++ +++EL+D+++  LA NL  G+
Sbjct: 1120 AAKGIGDKINQMIKEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGL 1179

Query: 1266 PFATPVFDGADEAEIKAMLRLAGMPESGQITLHDGRTGDAFERQVTVGYMHYLKLHHLVD 1325
            P ATPVFDGA E+ IKAML LA +P SGQ+TL DGRTGDAFER VTVGYM+ LKL+HLVD
Sbjct: 1180 PVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVD 1239

Query: 1326 DKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNG 1385
            DKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEMLTVKSDDVNG
Sbjct: 1240 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1299

Query: 1386 RTKVYENIVKGEHKIDAGMPESFNVLVKEIRSLAIDIDLE 1425
            RTK+Y+NIV G H ++ GMPESFNVL+KEIRSL I+I+LE
Sbjct: 1300 RTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELE 1339



 Score =  489 bits (1259), Expect = e-142
 Identities = 246/421 (58%), Positives = 316/421 (75%), Gaps = 6/421 (1%)

Query: 1   MTYSYTEKKRIRKSFAKRASVLDVPFLLATQLESYTAFLQAELPTAKRRNQGLQAAFGSI 60
           M YSYTEKKRIRK F  R  VLD+P+LL+ QL+S+  F++ +         GL+AAF S+
Sbjct: 1   MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56

Query: 61  FPIVSHSGNARLEFVSYQLAEPAFDVKECQQRGLTFASALRAKVRLVIMDREAP-DTVKE 119
           FPI S++GN+ L++VSY+L EP FDVKECQ RG+T++  LR K+RLVI D++AP  TVK+
Sbjct: 57  FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKD 116

Query: 120 VKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV 179
           +KEQEVYMGEIPLMT  G+FVINGTERVIVSQLHRSPGVFF+ D+GKTHSSGK+L++AR+
Sbjct: 117 IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176

Query: 180 IPYRGSWLDFEFDPKDILFFRVDRRRKMPVTTLLKAIGLTNEQILAGFFEFDDFKLLKNG 239
           IPYRGSWLDFEFDPKD L+ R+DRRRK+P + +L+A+G T+ +IL  FFE  +F++    
Sbjct: 177 IPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQT 236

Query: 240 ADFTLVPERLRGETARFDFCDKAGKVIVPKDKRITAKHIRDLDAAGIKHIAVPDDFLVGR 299
               LVPERLRGETA FD  +  GKV V K +R+TA+HIR L+  G+  I VP +++VG+
Sbjct: 237 LMMELVPERLRGETATFDI-EADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGK 295

Query: 300 VIGHNIIDKDSGEVIANANDEITESLLAKLREAGVAEFQTLYTNDLDRGAFISNTLRADD 359
           V   + +++ +GE+I  AN EI+   LA L +AG  + + L+TNDLD G F+S TLR D 
Sbjct: 296 VSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDS 355

Query: 360 TATKQAARVAIYRMMRPGEPPTEEAVEILFNGLFYSDDRYDLSGVGRMKFNRRIGRPDVV 419
           T  + +A V IYRMMRPGEPPT+EA E LF  LF+S +RYDLS VGRMKFN  IGR D  
Sbjct: 356 TTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAE 415

Query: 420 E 420
           E
Sbjct: 416 E 416