Pairwise Alignments

Query, 1427 a.a., DNA-directed RNA polymerase, beta subunit from Dechlorosoma suillum PS

Subject, 1361 a.a., DNA-directed RNA polymerase subunit beta from Marinobacter adhaerens HP15

 Score = 1313 bits (3397), Expect = 0.0
 Identities = 661/935 (70%), Positives = 778/935 (83%), Gaps = 4/935 (0%)

Query: 494  TLSPRDIVESIKLLVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLVRVERAVKER 553
            TL+  DI++ +K L+++RNG+G +DDID+LGNRRVR VGE+AENQFR GLVRVERAV+ER
Sbjct: 426  TLTHEDIIDVLKTLIDIRNGQGNVDDIDNLGNRRVRCVGEMAENQFRVGLVRVERAVRER 485

Query: 554  LSQAESDNLMPHDLINAKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGL 613
            LS AES+ LMP DLINAKP++AA+KEFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGL
Sbjct: 486  LSLAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGL 545

Query: 614  TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARTNSYGFLETPYRKVVDGK 673
            TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLA +AR+NSYGFLE+PYRKV +G 
Sbjct: 546  TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARSNSYGFLESPYRKVENGV 605

Query: 674  VTDQIEYLSAIEEGAYVVAQANAALGADGT-LVDELVTCREKGETILAEPSRVQYMDVAP 732
            VTD++ YLSAIEE  YV+AQA+AA+      L DELVT R + E  +  P  V +MDV+P
Sbjct: 606  VTDEVVYLSAIEESNYVIAQASAAMDEKTKRLTDELVTVRHQNEFTVTPPESVNFMDVSP 665

Query: 733  GQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGTAVQ 792
             Q+VSVAASLIPFLEHDDANRALMGANMQRQAVP L+ + PLVGTG+ERTVA DSG  V 
Sbjct: 666  RQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLKAQVPLVGTGVERTVAQDSGVCVS 725

Query: 793  ALRGGVVDYVDASRVVVRVHDDETVPGEVGVDIYNLTKYTRSNQNTNINQRPLVKMGDII 852
            A RGGV++ VDASR+VVRV+++ET  G+ GVDIYNLTKYTRSNQNT INQR +V+ GDII
Sbjct: 726  ARRGGVIESVDASRIVVRVNNEETEAGDAGVDIYNLTKYTRSNQNTCINQRSIVRQGDII 785

Query: 853  AKGDVVADGASTDKGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELT 912
            A+GDV+ADG S D GELALGQNM IAFMPWNGYNFEDSILISE+VV EDR T+IHI+ELT
Sbjct: 786  ARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISEKVVQEDRLTTIHIQELT 845

Query: 913  VVARDTKLGPEEITRDIASLGEVQLSRLDESGVVYIGAEVEAGDVLVGKVTPKGETQLTP 972
             VARDTKLG EEIT DI ++GE  LS+LDESG+VYIGAEV  GD+LVGKVTPKGETQLTP
Sbjct: 846  CVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVGPGDILVGKVTPKGETQLTP 905

Query: 973  EEKLLRAIFGEKASDVKDTSLRVPSGIAGTVIDVQVFTREGIERDKRAQSIIDDHLRGYK 1032
            EEKLLRAIFGEKASDVKDTS RVP+G  GTVIDVQVFTR+GIE+D+RAQSI  + L  Y+
Sbjct: 906  EEKLLRAIFGEKASDVKDTSSRVPTGTRGTVIDVQVFTRDGIEKDQRAQSIEKEQLDQYR 965

Query: 1033 QDLADQMRIVERDTFARVGRLITGKPANGGPKKLAKGTVVTQEYLDGIDPHNWFDVRMAD 1092
            +DL D+ RIVE  TF R+   + G+    GP  L KG  + + YL  +   +WF +RM D
Sbjct: 966  KDLKDEYRIVEGATFERLNSALKGQEVISGP-GLKKGATLEESYLAELPRSDWFKLRMKD 1024

Query: 1093 EEVAQQLEQLKESLEQTRKDFDIAFEEKRKKLTQGDELPPGVQKMVKVYVAVKRRLQPGD 1152
            E + + LE+ ++ LE  +K+ +  F++K+ KL QGD+L PGV K+VKVY+A+KRR+QPGD
Sbjct: 1025 ESLNELLEKSEQGLEDRKKEHEARFDDKKGKLQQGDDLAPGVLKIVKVYLAIKRRIQPGD 1084

Query: 1153 KMAGRHGNKGVVSRIVPVEDMPYMADGRPVDIVLNPLGVPSRMNVGQILEVHLGWAAKGL 1212
            KMAGRHGNKGV+S ++P+EDMPY   G  VD+VLNPLGVPSRMNVGQ+LE HLG AAKGL
Sbjct: 1085 KMAGRHGNKGVISSVMPIEDMPYDEHGNTVDVVLNPLGVPSRMNVGQVLETHLGAAAKGL 1144

Query: 1213 GYKIGDMLQAGAKAAEVRKFLEEIYN--SEGKKENLNELNDQEIMELAGNLTTGVPFATP 1270
            G +I  ML    K AE+RK L+EIYN   E  K +L+ L+D+EI+E+  NL  GVP ATP
Sbjct: 1145 GERISQMLDEQRKVAELRKLLDEIYNHSDEVFKVDLDSLSDKEILEMCHNLRGGVPMATP 1204

Query: 1271 VFDGADEAEIKAMLRLAGMPESGQITLHDGRTGDAFERQVTVGYMHYLKLHHLVDDKMHA 1330
            VFDGA EAE+K ML LAG+  +GQ  L+DGRTGD F+R VTVGYM+ LKL+HL+DDKMHA
Sbjct: 1205 VFDGAKEAEVKRMLELAGLSTTGQTMLYDGRTGDMFDRPVTVGYMYILKLNHLIDDKMHA 1264

Query: 1331 RSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRTKVY 1390
            RSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEMLTVKSDDVNGRTK+Y
Sbjct: 1265 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1324

Query: 1391 ENIVKGEHKIDAGMPESFNVLVKEIRSLAIDIDLE 1425
            +NIV G+H+++ GMPESFNVLVKEIRSL IDI+LE
Sbjct: 1325 KNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELE 1359



 Score =  531 bits (1369), Expect = e-154
 Identities = 288/556 (51%), Positives = 375/556 (67%), Gaps = 21/556 (3%)

Query: 1   MTYSYTEKKRIRKSFAKRASVLDVPFLLATQLESYTAFLQAELPTAKRRNQGLQAAFGSI 60
           MTYSYTEKKRIRK F+K  SV+DVP+LL+ QL+S+  FLQ E     RR  GL AAF S+
Sbjct: 3   MTYSYTEKKRIRKDFSKLPSVMDVPYLLSIQLDSFRDFLQMEAAPEDRRETGLHAAFKSV 62

Query: 61  FPIVSHSGNARLEFVSYQLAEPAFDVKECQQRGLTFASALRAKVRLVIMDREAPD-TVKE 119
           FPIVS+SGNA LE+VSY++ EP FDVKECQ RG+T+A+ LR KVRL+I D+E+ +  +K+
Sbjct: 63  FPIVSYSGNAALEYVSYRIGEPVFDVKECQLRGVTYAAPLRVKVRLIIYDKESSNKAIKD 122

Query: 120 VKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV 179
           +KEQEVYMGE+PLMT  G+FVINGTERVIVSQLHRSPGVFF+HD+GKTHSSGKLL+SARV
Sbjct: 123 IKEQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARV 182

Query: 180 IPYRGSWLDFEFDPKDILFFRVDRRRKMPVTTLLKAIGLTNEQILAGFFEFDDFKLLKNG 239
           IPYRGSWLDFEFDPKD +F R+DRRRK+P + LL+A+G T+EQ+L  FFE   F L    
Sbjct: 183 IPYRGSWLDFEFDPKDSVFVRIDRRRKLPASILLRALGYTSEQMLEMFFETSKFSLGAEV 242

Query: 240 ADFTLVPERLRGETARFDFCDKAGKVIVPKDKRITAKHIRDLDAAGIKHIAVPDDFLVGR 299
               LVP RLRG+ A FD  D  G VIV + +RITA+HI+ L+ AGI  + VP ++L GR
Sbjct: 243 CKLELVPSRLRGDIATFDIKDNDGNVIVEEGRRITARHIKQLEKAGINELEVPTEYLYGR 302

Query: 300 VIGHNIIDKDSGEVIANANDEITESLLAKLREAGVAEFQTLYTNDLDRGAFISNTLRADD 359
           V+  ++ID+ SGEV+   N E+TE L+ K+ +AGV + +TLYTNDLD G F+S+TLR D 
Sbjct: 303 VLAKDMIDQASGEVLVECNSELTEELVTKILDAGVKDIETLYTNDLDCGPFMSDTLRIDP 362

Query: 360 TATKQAARVAIYRMMRPGEPPTEEAVEILFNGLFYSDDRYDLSGVGRMKFNRRIGRPDVV 419
           T T   A V IYRMMRPGEPPT+E+ E LFN LF+S++RYDLS VGRMK NRR+ R +  
Sbjct: 363 TRTPLEALVEIYRMMRPGEPPTKESAENLFNNLFFSEERYDLSAVGRMKLNRRLRREEST 422

Query: 420 -EYKVTIKNAPHKTEALAKAIAEFTGANQGTVQEILNELQYGSRAAAENLTEEAAHTLAA 478
            E  +T ++     + L   I    G  QG V +I N      R   E    +    L  
Sbjct: 423 GEGTLTHEDI---IDVLKTLIDIRNG--QGNVDDIDNLGNRRVRCVGEMAENQFRVGLVR 477

Query: 479 QLKALGANVEVREQLTLSPRDIVESIKL------------LVELRNGRGEIDDIDHLGNR 526
             +A+   + + E   L P+D++ +  +            L +  +    + ++ H   R
Sbjct: 478 VERAVRERLSLAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTH--KR 535

Query: 527 RVRSVGELAENQFRAG 542
           R+ ++G     + RAG
Sbjct: 536 RISALGPGGLTRERAG 551