Pairwise Alignments

Query, 443 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  440 bits (1132), Expect = e-128
 Identities = 238/418 (56%), Positives = 294/418 (70%), Gaps = 4/418 (0%)

Query: 1   MTFADLDLVPPLLEALDVLGYQTPTPVQEKAIPAVLAGGDLMAAAQTGTGKTASFALPLL 60
           M+F+ L L  PL +A+   GY TP+P+Q +AIPAVL G D+MAAAQTGTGKTA F LPLL
Sbjct: 1   MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  QRLAHDPEPTASNSTRALILVPTRELAQQVCDSFVAYGQFLVLRSYAVYGGVSINPQMMK 120
           + LA   +   S  TRAL+L PTRELA QV +S   YG++L LRS  V+GGV INPQ+ K
Sbjct: 61  ELLAKGHK-AKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINK 119

Query: 121 LRKGVDILVATPGRLLDLHRQNAVRFDQVRTLVLDEADRMLDLGFARELNALFALLPKQR 180
           LR GVD+LVATPGRLLDL +QNAV+F+Q+  LVLDEADRMLD+GF R++  + ALLP +R
Sbjct: 120 LRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR 179

Query: 181 QTLLFSATFSDAIRSMADQLLKKPLSIETARPNATARGIKQWVVPVDKKRKSALFCHLYK 240
           Q L+FSATFSD IR +A  L+  P+ I     NA A  +KQW+ PVDK +KSAL   L K
Sbjct: 180 QNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIK 239

Query: 241 HKKWDQVLVFVKTRKGVDELVETLTAKGIAAESIHGDKPQPARLRALESFKAGQVRVLVA 300
            + W QVLVF +T+ G + L ++L    I+A +IHG+K Q AR +AL  FK+G+VRVLVA
Sbjct: 240 QENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVA 299

Query: 301 TDVASRGLDIDDLPRVVNFDLPIVPEDYVHRIGRTARAGASGEAVSLVCADEVNLLGAIE 360
           TD+A+RGLDID LP+VVNFDLP VPEDYVHRIGRT RAGA+G+AVSLV ++E+ LL  IE
Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIE 359

Query: 361 VLIGQPLSRIEQHGFEPDHRVPET--GPAGQVIKKPKKPKMPKHLDYGIGSGPSRGKG 416
            LI + L R E  GF P H +PET   P G+  K        KH   G    P  G G
Sbjct: 360 RLINRVLERQEVEGFSPVHALPETTLNPQGKDTKVKAVANHRKHRSAG-KPAPRSGSG 416