Pairwise Alignments

Query, 443 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

Subject, 409 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  371 bits (952), Expect = e-107
 Identities = 201/401 (50%), Positives = 265/401 (66%), Gaps = 3/401 (0%)

Query: 1   MTFADLDLVPPLLEALDVLGYQTPTPVQEKAIPAVLAGGDLMAAAQTGTGKTASFALPLL 60
           M+F+ L L   L++ L  LGYQ PTP+Q +AIPA+L   D+MA AQTGTGKTA+FALP+L
Sbjct: 1   MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  QRLAHDPEPT-ASNSTRALILVPTRELAQQVCDSFVAYGQFLVLRSYAVYGGVSINPQMM 119
           Q L  D +   A+ + RAL+LVPTRELA QV  SFV Y +   +R    YGGVSI  Q  
Sbjct: 61  QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 120 KLRKGVDILVATPGRLLDLHRQNAVRFDQVRTLVLDEADRMLDLGFARELNALFALLPKQ 179
               G+D+L+ATPGRLLD  RQ A+  +Q+ TLV DEADRMLD+GF  E+ A+   +P Q
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query: 180 RQTLLFSATFSDAIRSMADQLLKKPLSIETARPNATARGIKQWVVPVDKKRKSALFCHLY 239
           RQTLLFSAT  D+I S +  LL+ P  IE A+PN TA  I+Q V  +D  RK+    HL 
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLV 240

Query: 240 KHKKWDQVLVFVKTRKGVDELVETLTAKGIAAESIHGDKPQPARLRALESFKAGQVRVLV 299
           + K W QVL+F +T++GVD+L   L   G+A +S HGD  Q AR + L+ FK G V+VLV
Sbjct: 241 RSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLV 300

Query: 300 ATDVASRGLDIDDLPRVVNFDLPIVPEDYVHRIGRTARAGASGEAVSLVCADEVNLLGAI 359
           ATDVA+RGLDI +L  V+NF+LP + EDY+HRIGRT RAG++G A++L   ++  LL  +
Sbjct: 301 ATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360

Query: 360 EVLIGQPLSRIEQHGFEPDHR--VPETGPAGQVIKKPKKPK 398
           E L+ + L +    GFEPD    +PE     +  +K +  K
Sbjct: 361 ETLLDKRLPQQWYPGFEPDFNKMLPEPRRNSKAAQKQRAKK 401