Pairwise Alignments

Query, 443 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

Subject, 427 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  360 bits (924), Expect = e-104
 Identities = 193/384 (50%), Positives = 256/384 (66%), Gaps = 5/384 (1%)

Query: 2   TFADLDLVPPLLEALDVLGYQTPTPVQEKAIPAVLAGGDLMAAAQTGTGKTASFALPLLQ 61
           +FA+L ++ PL   L  LGY +PTPVQ   IPAVL+G D++A A TG+GKTA+FALPLLQ
Sbjct: 10  SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69

Query: 62  RLAHDPEPTASNST-RALILVPTRELAQQVCDSFVAYGQFL--VLRSYAVYGGVSINPQM 118
           RL+       S    R L+LVPTRELAQQV DSF++Y       L+  A +GGVS+N QM
Sbjct: 70  RLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQM 129

Query: 119 MKLRKGVDILVATPGRLLDLHRQNAVRFDQVRTLVLDEADRMLDLGFARELNALFALLPK 178
             LR G D+LVATPGRLLDL   NA++  QV   VLDEADRML LGF  EL  + A LP+
Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189

Query: 179 QRQTLLFSATFSDAIRSMADQLLKKPLSIETARPNATARGIKQWVVPVDKKRKSALFCHL 238
           Q+QTLLFSATF + +R++  +LL +PL         +   I+Q V+ V++++K+AL  HL
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQEST--IEQRVITVNREQKTALLAHL 247

Query: 239 YKHKKWDQVLVFVKTRKGVDELVETLTAKGIAAESIHGDKPQPARLRALESFKAGQVRVL 298
            K  +W Q L+FV  +   + L + L+ +GI+AE  HGDK Q AR R L+ FK G++ VL
Sbjct: 248 IKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVL 307

Query: 299 VATDVASRGLDIDDLPRVVNFDLPIVPEDYVHRIGRTARAGASGEAVSLVCADEVNLLGA 358
           +ATD+A+RG+DID LP V+NFDLP  P DY+HRIGR+ RAG +G AV+L+  +E +  G 
Sbjct: 308 IATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGV 367

Query: 359 IEVLIGQPLSRIEQHGFEPDHRVP 382
           IE      L R +  GFE +  +P
Sbjct: 368 IEKKNKIKLVREQIPGFEANAEIP 391