Pairwise Alignments

Query, 443 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

Subject, 475 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  372 bits (956), Expect = e-107
 Identities = 196/382 (51%), Positives = 256/382 (67%), Gaps = 1/382 (0%)

Query: 1   MTFADLDLVPPLLEALDVLGYQTPTPVQEKAIPAVLAGGDLMAAAQTGTGKTASFALPLL 60
           M F+ L L   L++A+  LGYQ+PTP+Q +AIP++LAG +++AAAQTGTGKTASF LPLL
Sbjct: 1   MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 61  QRLAHDPEPTASNSTRALILVPTRELAQQVCDSFVAYGQFLVLRSYAVYGGVSINPQMMK 120
            R A  P+       R++IL PTRELA QV  +   Y ++L L + A+YGGV   PQ  +
Sbjct: 61  HRFADAPK-IRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKR 119

Query: 121 LRKGVDILVATPGRLLDLHRQNAVRFDQVRTLVLDEADRMLDLGFARELNALFALLPKQR 180
           L +GVD+LVATPGRLLD++ Q A+RFD+V  LVLDEADRMLD+GF  ++N +   LP+QR
Sbjct: 120 LIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR 179

Query: 181 QTLLFSATFSDAIRSMADQLLKKPLSIETARPNATARGIKQWVVPVDKKRKSALFCHLYK 240
           Q LLFSAT S  ++++A   +   + IE +R NA +  I QW+  VDK RKSAL  HL K
Sbjct: 180 QNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSHLIK 239

Query: 241 HKKWDQVLVFVKTRKGVDELVETLTAKGIAAESIHGDKPQPARLRALESFKAGQVRVLVA 300
              W Q L+F++T+ G  +LV  L  +GI AE+ H  + Q  R + L  FKAG+V  LVA
Sbjct: 240 ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVA 299

Query: 301 TDVASRGLDIDDLPRVVNFDLPIVPEDYVHRIGRTARAGASGEAVSLVCADEVNLLGAIE 360
           T V SRG+DID L RV+N+DLP   +DY+HRIGRT RAG  GEA+S V  D+   L AIE
Sbjct: 300 TGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIE 359

Query: 361 VLIGQPLSRIEQHGFEPDHRVP 382
             +G  + R    GFEP   VP
Sbjct: 360 RRLGHIIERKNIEGFEPKKAVP 381