Pairwise Alignments

Query, 361 a.a., outer membrane protein (porin) from Dechlorosoma suillum PS

Subject, 384 a.a., porin from Burkholderia phytofirmans PsJN

 Score =  139 bits (351), Expect = 1e-37
 Identities = 110/387 (28%), Positives = 164/387 (42%), Gaps = 29/387 (7%)

Query: 1   MQKKFIALAVAALASGAAFAQSNVQVYGVADFGLAVNGSALNGTTTGQNTRFDSGIASGS 60
           M  K  A A  A+ + AA AQS+V +YGV D G++   ++   T      ++D G+A GS
Sbjct: 1   MNNKVFAAATLAVFATAAHAQSSVTLYGVIDAGISYVNNSKTATGHDNLFKYDDGVAQGS 60

Query: 61  RLGFKGTEDLGNGLKALFNFEMGLTLDDGASAQ-GRTFGRQSYVGLT-GGFGTVIGGRIY 118
           R G +GTEDLG GLKALF  E G    +G   Q G  FGRQ+YVGL+  G G++  GR Y
Sbjct: 61  RWGLRGTEDLGGGLKALFVLESGFNSGNGTLGQGGALFGRQAYVGLSKDGIGSLTFGRQY 120

Query: 119 TPHYTLMAQIDPFGVGTAGRANNLFASSSLAAGLYDPIRVNNTVAYVSPSFSGLSVTAAY 178
           +     +     +  G    A N +A            R+NN V + S +F+GL+  A Y
Sbjct: 121 SFSTDYLG--GNYSTGGQTVAGN-YAYHINDVDQLTSSRINNAVKFSSANFAGLTFGAMY 177

Query: 179 G----TNSLDNQESAANTSNQNRLFAIAPTYTNGPLTVGLNYHQVKLDGNALIG------ 228
           G      +     +   T+  +R ++    Y NGP  VG  Y  ++    +         
Sbjct: 178 GFSNQAGAFAGSPTVGTTAGSSRAYSFGVNYANGPFGVGAAYTDIRFPAQSTPAFSTAMA 237

Query: 229 --GAGSDGKLSSYTLAGKYDFGVLALSGAYGSNKVEANGNDADKVRNWLIGVSAPIGAKV 286
               G+   L ++ + G+Y      L   Y + + E           +  G        +
Sbjct: 238 NVTTGTVRDLRTFGVGGRYTIAAATLWALYTNTRFEPITGGTTTFAAYEAGAKYAFTPAL 297

Query: 287 VLKASYNNLKDKLNDNADAKQFAIGADYLLSKRTKLYT-AFSKISNDDNAAYTVAHA--- 342
              A Y  +     +     Q  +  DY LSKRT +Y     +I++  NAA     A   
Sbjct: 298 TAGAGYTYMHLSNANRGHWNQADLSVDYALSKRTDVYALGIYQIASGHNAATGDVQAQIG 357

Query: 343 --------SGGSGNNESQFNLGINHSF 361
                   SG   +N+  F +GI H F
Sbjct: 358 SSTSYFSTSGTGSDNQLAFRVGIRHKF 384